From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 21 Jan 2019 15:58:32 +0000 (+0000)
Subject: JAL-3187 also repaint complement on change in FeatureTypeSettings
X-Git-Tag: Release_2_11_1_0~70
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=7ff2d35a4c1634a4b55228b4cf43a822928b398c;p=jalview.git

JAL-3187 also repaint complement on change in FeatureTypeSettings
---

diff --git a/src/jalview/gui/FeatureTypeSettings.java b/src/jalview/gui/FeatureTypeSettings.java
index 58bbbe8..ceb38b0 100644
--- a/src/jalview/gui/FeatureTypeSettings.java
+++ b/src/jalview/gui/FeatureTypeSettings.java
@@ -20,6 +20,7 @@
  */
 package jalview.gui;
 
+import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureColourI;
 import jalview.datamodel.GraphLine;
@@ -667,7 +668,7 @@ public class FeatureTypeSettings extends JalviewDialog
          */
         if (ap != null)
         {
-          ap.paintAlignment(true, true);
+          refreshDisplay(true);
         }
       }
     });
@@ -868,7 +869,7 @@ public class FeatureTypeSettings extends JalviewDialog
      * save the colour, and repaint stuff
      */
     fr.setColour(featureType, acg);
-    ap.paintAlignment(updateStructsAndOverview, updateStructsAndOverview);
+    refreshDisplay(updateStructsAndOverview);
 
     updateColoursTab();
   }
@@ -1009,7 +1010,7 @@ public class FeatureTypeSettings extends JalviewDialog
   {
     fr.setColour(featureType, originalColour);
     fr.setFeatureFilter(featureType, originalFilter);
-    ap.paintAlignment(true, true);
+    refreshDisplay(true);
   }
 
   /**
@@ -1738,8 +1739,26 @@ public class FeatureTypeSettings extends JalviewDialog
      * (note this might now be an empty filter with no conditions)
      */
     fr.setFeatureFilter(featureType, combined.isEmpty() ? null : combined);
-    ap.paintAlignment(true, true);
+    refreshDisplay(true);
 
     updateFiltersTab();
   }
+
+  /**
+   * Repaints alignment, structure and overview (if shown). If there is a
+   * complementary view which is showing this view's features, then also
+   * repaints that.
+   * 
+   * @param updateStructsAndOverview
+   */
+  void refreshDisplay(boolean updateStructsAndOverview)
+  {
+    ap.paintAlignment(true, updateStructsAndOverview);
+    AlignViewportI complement = ap.getAlignViewport().getCodingComplement();
+    if (complement != null && complement.isShowComplementFeatures())
+    {
+      AlignFrame af2 = Desktop.getAlignFrameFor(complement);
+      af2.alignPanel.paintAlignment(true, updateStructsAndOverview);
+    }
+  }
 }