From: j.procter@dundee.ac.uk Date: Tue, 22 Jul 2014 19:12:48 +0000 (+0100) Subject: JAL-1333 JAL-1533 todo to get Chimera superposing properly we need to specify a set... X-Git-Tag: Jalview_2_9~179^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8149ee3ab3c19c60463adc13e4212f1f19b19331;p=jalview.git JAL-1333 JAL-1533 todo to get Chimera superposing properly we need to specify a set of atoms from each chain (or model in chimera-speak), but for chains with multiple models, each model needs to be superposed independently (potentially) --- diff --git a/src/jalview/ext/jmol/PDBFileWithJmol.java b/src/jalview/ext/jmol/PDBFileWithJmol.java index 009b9e8..9672268 100644 --- a/src/jalview/ext/jmol/PDBFileWithJmol.java +++ b/src/jalview/ext/jmol/PDBFileWithJmol.java @@ -175,6 +175,9 @@ public class PDBFileWithJmol extends AlignFile implements sq.addPDBId(pdbe); pdbe.setProperty(new Hashtable()); pdbe.getProperty().put("CHAIN", "" + _lastChainId); + // JAL-1533 + // Need to put the number of models for this polymer somewhere for Chimera/others to grab + // pdbe.getProperty().put("PDBMODELS", biopoly.) seqs.add(sq); if (!(biopoly.isDna() || biopoly.isRna())) {