From: Jim Procter <jprocter@dundee.ac.uk>
Date: Wed, 15 May 2024 15:54:47 +0000 (+0100)
Subject: JAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a test for this
X-Git-Tag: Release_2_11_4_0~39^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=83043201cd0a00131ec745674ec486d6dcbf5d18;p=jalview.git

JAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a test for this
---

diff --git a/src/jalview/gui/StructureChooser.java b/src/jalview/gui/StructureChooser.java
index 170e76a..0e834d4 100644
--- a/src/jalview/gui/StructureChooser.java
+++ b/src/jalview/gui/StructureChooser.java
@@ -1856,11 +1856,13 @@ public class StructureChooser extends GStructureChooser
       sv = sc.launchStructureViewer(ssm, new PDBEntry[] { fileEntry }, ap,
               new SequenceI[]
               { seq }, viewerType);
+      // foo
       sv.getJalviewStructureDisplay().raiseViewer();
     }
 
     sc.mainFrame.dispose();
 
+    // TODO should honor preferences - only show reference annotation that is requested - JAL-4415 JAL-3124
     if (showRefAnnotations)
     {
       showReferenceAnnotationsForSequence(ap.alignFrame, seq);