From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 11 Nov 2005 18:03:57 +0000 (+0000)
Subject: extended report of archive contents.
X-Git-Tag: Release_0.2~430
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=85bcc8e60b7652bcbc3994463bb72dfb47c4766b;p=vamsas.git

extended report of archive contents.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@90 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/src/org/vamsas/test/simpleclient/ArchiveReader.java b/src/org/vamsas/test/simpleclient/ArchiveReader.java
index 2156c51..46ae199 100644
--- a/src/org/vamsas/test/simpleclient/ArchiveReader.java
+++ b/src/org/vamsas/test/simpleclient/ArchiveReader.java
@@ -4,17 +4,43 @@ import java.io.BufferedInputStream;
 import java.io.File;
 import java.io.InputStream;
 import java.io.InputStreamReader;
-import java.util.Vector;
 
 import org.vamsas.client.simpleclient.VamsasArchiveReader;
+import org.vamsas.objects.core.ApplicationData;
 import org.vamsas.objects.core.VAMSAS;
 import org.vamsas.objects.core.VamsasDocument;
 
 public class ArchiveReader {
-  public static boolean reportDocument(VamsasDocument document) {
+  public static boolean reportDocument(VamsasDocument document, VamsasArchiveReader archive) {
     if (document!=null) {
       System.out.print("Vamsas Document version '"+document.getVersion()+"'");
       System.out.print("Document contains "+document.getVAMSASCount()+" VAMSAS Elements and "+document.getApplicationDataCount()+" elements.\n");
+      if (document.getApplicationDataCount()>0) {
+        System.out.print("There are "+document.getApplicationDataCount()+" ApplicationData references.\n");
+        ApplicationData appd[] = document.getApplicationData();
+        for (int i=0,j=appd.length; i<j; i++) {
+          System.out.print("Application "+i+": '"+appd[i].getName()+"'\nVersion '"+appd[i].getVersion()+"'\nURN: '"+appd[i].getUrn()+"'\n");
+          System.out.print("AppData is ");
+          if (appd[i].getAppDataChoice().getDataReference()==null) {
+            String appData=appd[i].getAppDataChoice().getData();
+            if (appData.length()>1) {
+              System.out.print("a reference ("+appData+")");
+              InputStream jstrm;
+              if ((jstrm=archive.getAppdataStream(appData))!=null)
+                System.out.println(" which resolves to a JarEntry.");
+              else {
+                System.out.println(" which does not resolve to a JarEntry.");
+                System.err.println("Unresolved appdata reference '"+appData+"'");
+              }
+            } else {
+              System.out.println("an empty reference.");
+            }
+          } else {
+            System.out.println("an embedded chunk of "+appd[i].getAppDataChoice().getDataReference().length+" bytes.");
+          }
+        }
+          
+      }
       return true;
     } else {
       System.out.print("Document Object is null");
@@ -45,7 +71,7 @@ public class ArchiveReader {
       if (var.isValid()) {
         InputStreamReader vdoc = new InputStreamReader(var.getVamsasDocumentStream());
         VamsasDocument doc = VamsasDocument.unmarshal(vdoc);
-        if (reportDocument(doc)) {
+        if (reportDocument(doc, var)) {
           roots = doc.getVAMSAS();
         }
       } else {