From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 14 Sep 2012 02:34:45 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=87c745e122b46fad66e38857a1dd7f82323a9d40;p=jalview.git

in progress
---

diff --git a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
index c7d8146..8032a28 100644
--- a/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/io/parser/hmmscan_domain_extractor.rb
@@ -107,7 +107,8 @@ module Evoruby
                 add_domain_number,
                 add_domain_number_as_digit,
                 add_domain_number_as_letter,
-                trim_name )
+                trim_name ,
+                add_species )
               domain_pass_counter += 1
               count_species( sequence, passed_species_counts )
               if passed_seqs.find_by_name_start( sequence, true ).length < 1