From: hansonr <hansonr@stolaf.edu>
Date: Wed, 27 Jun 2018 10:15:22 +0000 (+0100)
Subject: Consensus LOGO done
X-Git-Tag: Release_2_11_4_0~45^2~18^2~634
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8875ec9fa2dcd7dcb494a1538ae61e3279ceb4aa;p=jalview.git

Consensus LOGO done
---

diff --git a/src/jalview/analysis/CodingUtils.java b/src/jalview/analysis/CodingUtils.java
index 34f8619..92b39c3 100644
--- a/src/jalview/analysis/CodingUtils.java
+++ b/src/jalview/analysis/CodingUtils.java
@@ -109,6 +109,15 @@ public class CodingUtils
     return result;
   }
 
+  public static void decodeCodon2(int encoded, char[] result)
+  {
+   result[2] = decodeNucleotide(encoded & 3);
+    encoded = encoded >>> CODON_ENCODING_BITSHIFT;
+    result[1] = decodeNucleotide(encoded & 3);
+    encoded = encoded >>> CODON_ENCODING_BITSHIFT;
+    result[0] = decodeNucleotide(encoded & 3);
+  }
+
   /**
    * Convert value 0/1/2/3 to 'A'/'C'/'G'/'T'
    *