From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 21 Apr 2020 10:48:35 +0000 (+0100)
Subject: JAL-3567 translated rather than imputed peptide
X-Git-Tag: Develop-2_11_2_0-d20201215~33^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8886aa756d24c0f1a06f54474298c4c93b0cbccf;p=jalview.git

JAL-3567 translated rather than imputed peptide
---

diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java
index 01574e1..6eeba2f 100755
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -639,7 +639,7 @@ public class SequenceFeature implements FeatureLocationI
     if (!consequence.isEmpty())
     {
       sb.append(String.format(ROW_DATA, "Consequence",
-              "<i>Imputed by Jalview</i>", consequence));
+              "<i>Translated by Jalview</i>", consequence));
     }
 
     if (otherDetails != null)
diff --git a/test/jalview/datamodel/SequenceFeatureTest.java b/test/jalview/datamodel/SequenceFeatureTest.java
index b4848a5..f8479a3 100644
--- a/test/jalview/datamodel/SequenceFeatureTest.java
+++ b/test/jalview/datamodel/SequenceFeatureTest.java
@@ -350,7 +350,7 @@ public class SequenceFeatureTest
             + "<tr><td>Peptide Location</td><td>TestSeq</td><td>9</td></tr>"
             + "<tr><td>Type</td><td>variant</td><td></td></tr>"
             + "<tr><td>Description</td><td>G,C</td><td></td></tr>"
-            + "<tr><td>Consequence</td><td><i>Imputed by Jalview</i></td><td>p.Leu9Phe</td></tr>"
+            + "<tr><td>Consequence</td><td><i>Translated by Jalview</i></td><td>p.Leu9Phe</td></tr>"
             + "<tr><td>alleles</td><td></td><td>G,C</td></tr>"
             + "</table>";