From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 18 Jan 2013 15:55:58 +0000 (+0000)
Subject: JAL-1238 order to place primary sources before lower tier sources
X-Git-Tag: Jalview_2_9~253^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=89822d8d5731171df5228c5a4c78bd8ff7c8abc8;p=jalview.git

JAL-1238 order to place primary sources before lower tier sources
---

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index 45b866e..e475915 100644
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -272,9 +272,10 @@ public class ASequenceFetcher
       DbSourceProxy[] l = dblist.values().toArray(new DbSourceProxy[0]);
       int i = 0;
       String[] nm = new String[l.length];
+      // make sure standard dbs appear first, followed by reference das sources, followed by anything else.
       for (DbSourceProxy s : l)
       {
-        nm[i++] = s.getDbName().toLowerCase();
+        nm[i++] = ""+s.getTier()+s.getDbName().toLowerCase();
       }
       jalview.util.QuickSort.sort(nm, l);
       dbs = new ArrayList<DbSourceProxy>();