From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 15 Sep 2005 10:28:30 +0000 (+0000)
Subject: Add Uracil as X unknown
X-Git-Tag: Release_2_05b~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8a18973f7e4521c7dd3705ebd8fabd3ca08cfcaf;p=jalview.git

Add Uracil as X unknown
---

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index f92bfd1..a382662 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -55,6 +55,7 @@ public class ResidueProperties
     aaHash.put("B", new Integer(20));
     aaHash.put("Z", new Integer(21));
     aaHash.put("X", new Integer(22));
+    aaHash.put("U", new Integer(22));
     aaHash.put("a", new Integer(0));
     aaHash.put("r", new Integer(1));
     aaHash.put("n", new Integer(2));
@@ -78,6 +79,7 @@ public class ResidueProperties
     aaHash.put("b", new Integer(20));
     aaHash.put("z", new Integer(21));
     aaHash.put("x", new Integer(22));
+    aaHash.put("u", new Integer(22));
     aaHash.put("-", new Integer(23));
     aaHash.put("*", new Integer(23));
     aaHash.put(".", new Integer(23));