From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 23 Apr 2018 11:27:51 +0000 (+0100)
Subject: JAL-2954 more efficient SearchResults.markColumns
X-Git-Tag: Release_2_10_4~33
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8a5259b87989c41a31e7e318801abdee3e211a58;p=jalview.git

JAL-2954 more efficient SearchResults.markColumns
---

diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java
index cde50e5..d1e3fcc 100755
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -267,9 +267,12 @@ public class SearchResults implements SearchResultsI
   {
     int count = 0;
     BitSet mask = new BitSet();
+    int startRes = sqcol.getStartRes();
+    int endRes = sqcol.getEndRes();
+
     for (SequenceI s : sqcol.getSequences())
     {
-      int[] cols = getResults(s, sqcol.getStartRes(), sqcol.getEndRes());
+      int[] cols = getResults(s, startRes, endRes);
       if (cols != null)
       {
         for (int pair = 0; pair < cols.length; pair += 2)