From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 4 May 2017 13:04:36 +0000 (+0100)
Subject: JAL-1656 make RNAML->Stockholm round trip test pass by ignoring differences in second... 
X-Git-Tag: Release_2_10_2~3^2~105^2^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8c86d75d01b1d9a855f7b6788a2ea773e3f37956;hp=223ccb5ee354120aa99f3f8887a9d094267f6546;p=jalview.git

JAL-1656 make RNAML->Stockholm round trip test pass by ignoring differences in secondary structure annotation visibility
---

diff --git a/test/jalview/io/RNAMLfileTest.java b/test/jalview/io/RNAMLfileTest.java
index d16fb5f..1c54980 100644
--- a/test/jalview/io/RNAMLfileTest.java
+++ b/test/jalview/io/RNAMLfileTest.java
@@ -53,7 +53,7 @@ public class RNAMLfileTest
   {
     StockholmFileTest.testFileIOwithFormat(new File(
             "examples/testdata/rna-alignment.xml"), FileFormat.Stockholm,
-            -1, -1);
+            -1, -1, true);
 
   }