From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Sun, 31 Dec 2017 18:41:49 +0000 (+0000)
Subject: JAL-1953 start work on storing nodes in a map per tree object instead of
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8dc7428acc4f1d737ea92a0e43de68e49902e95e;hp=034e87858efb904a11646568bb5626863d42e0eb;p=jalview.git

JAL-1953 start work on storing nodes in a map per tree object instead of
all together in a static map
---

diff --git a/src/jalview/ext/archaeopteryx/Tree.java b/src/jalview/ext/archaeopteryx/Tree.java
index 12dd8c7..345820d 100644
--- a/src/jalview/ext/archaeopteryx/Tree.java
+++ b/src/jalview/ext/archaeopteryx/Tree.java
@@ -15,6 +15,10 @@ public class Tree implements TreeI
 {
   private final Phylogeny tree;
 
+  // alternative to static maps in TreeNode
+  // private Map<PhylogenyNode, TreeNodeI> originalNodes = new HashMap<>(500);
+  // private Map<TreeNodeI, PhylogenyNode> wrappedNodes = new HashMap<>(500);
+
   public Tree()
   {
     tree = new Phylogeny();