From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 30 Oct 2014 15:40:31 +0000 (+0000)
Subject: JAL-674 helpful javadoc for remap method
X-Git-Tag: Jalview_2_9~155^2~15^2~18
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8e355d5b0553a9c786cd1d295c73aeb140416be7;p=jalview.git

JAL-674 helpful javadoc for remap method
---

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 603efe0..4159ddb 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -1202,6 +1202,8 @@ public class AlignmentAnnotation
    * @param idxoffset
    *          - offset added to index when referencing either coordinate system
    * @note no checks are made as to whether from and/or to are sensible
+   * @note caller should add the remapped annotation to newref if they have not
+   *       already
    */
   public void remap(SequenceI newref, int[][] mapping, int from, int to,
           int idxoffset)