From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 22 Apr 2016 14:23:05 +0000 (+0100)
Subject: JAL-2068 redundant implements clauses removed
X-Git-Tag: Release_2_10_0~249^2~15
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=8fe8fc5ad87962f2cc74f4ab368b114b4c17859e;p=jalview.git

JAL-2068 redundant implements clauses removed
---

diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java
index a8698e6..14e2a31 100644
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -21,7 +21,6 @@
 package jalview.workers;
 
 import jalview.analysis.AAFrequency;
-import jalview.api.AlignCalcWorkerI;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.AlignmentAnnotation;
@@ -32,8 +31,7 @@ import jalview.schemes.ColourSchemeI;
 
 import java.util.Hashtable;
 
-public class ConsensusThread extends AlignCalcWorker implements
-        AlignCalcWorkerI
+public class ConsensusThread extends AlignCalcWorker
 {
   public ConsensusThread(AlignViewportI alignViewport,
           AlignmentViewPanel alignPanel)
diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java
index 236bccf..1075e4d 100644
--- a/src/jalview/workers/ConservationThread.java
+++ b/src/jalview/workers/ConservationThread.java
@@ -21,7 +21,6 @@
 package jalview.workers;
 
 import jalview.analysis.Conservation;
-import jalview.api.AlignCalcWorkerI;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.AlignmentAnnotation;
@@ -30,8 +29,7 @@ import jalview.datamodel.AlignmentI;
 import java.util.ArrayList;
 import java.util.List;
 
-public class ConservationThread extends AlignCalcWorker implements
-        AlignCalcWorkerI
+public class ConservationThread extends AlignCalcWorker
 {
 
   private int ConsPercGaps = 25; // JBPNote : This should be a configurable
diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java
index e0b3833..3483dac 100644
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -21,7 +21,6 @@
 package jalview.workers;
 
 import jalview.analysis.StructureFrequency;
-import jalview.api.AlignCalcWorkerI;
 import jalview.api.AlignViewportI;
 import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.AlignmentAnnotation;
@@ -31,8 +30,7 @@ import jalview.datamodel.SequenceI;
 
 import java.util.Hashtable;
 
-public class StrucConsensusThread extends AlignCalcWorker implements
-        AlignCalcWorkerI
+public class StrucConsensusThread extends AlignCalcWorker
 {
   public StrucConsensusThread(AlignViewportI alignViewport,
           AlignmentViewPanel alignPanel)
diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java
index f929b1e..f4b1c31 100644
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -20,7 +20,6 @@
  */
 package jalview.ws.jws2;
 
-import jalview.api.AlignCalcWorkerI;
 import jalview.bin.Cache;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.GraphLine;
@@ -46,8 +45,7 @@ import compbio.data.sequence.Score;
 import compbio.data.sequence.ScoreManager.ScoreHolder;
 import compbio.metadata.Argument;
 
-public class AADisorderClient extends JabawsCalcWorker implements
-        AlignCalcWorkerI
+public class AADisorderClient extends JabawsCalcWorker
 {
 
   private static final String THRESHOLD = "THRESHOLD";
diff --git a/src/jalview/ws/jws2/JPred301Client.java b/src/jalview/ws/jws2/JPred301Client.java
index e4d6329..c15f256 100644
--- a/src/jalview/ws/jws2/JPred301Client.java
+++ b/src/jalview/ws/jws2/JPred301Client.java
@@ -20,7 +20,6 @@
  */
 package jalview.ws.jws2;
 
-import jalview.api.AlignCalcWorkerI;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.Annotation;
 import jalview.gui.AlignFrame;
@@ -43,9 +42,7 @@ import compbio.data.sequence.JpredAlignment;
 import compbio.metadata.Argument;
 
 public class JPred301Client extends JabawsMsaInterfaceAlignCalcWorker
-        implements AlignCalcWorkerI
 {
-
   /**
    * 
    * @return default args for this service when run as dynamic web service
@@ -87,6 +84,7 @@ public class JPred301Client extends JabawsMsaInterfaceAlignCalcWorker
     return (seqs.size() > 1);
   }
 
+  @Override
   public String getServiceActionText()
   {
     return "calculating consensus secondary structure prediction using JPred service";
@@ -112,6 +110,7 @@ public class JPred301Client extends JabawsMsaInterfaceAlignCalcWorker
    * update the consensus annotation from the sequence profile data using
    * current visualization settings.
    */
+  @Override
   public void updateResultAnnotation(boolean immediate)
   {
     if (immediate || !calcMan.isWorking(this) && msascoreset != null)
diff --git a/src/jalview/ws/jws2/RNAalifoldClient.java b/src/jalview/ws/jws2/RNAalifoldClient.java
index 41aa223..9ca6d2e 100644
--- a/src/jalview/ws/jws2/RNAalifoldClient.java
+++ b/src/jalview/ws/jws2/RNAalifoldClient.java
@@ -20,7 +20,6 @@
  */
 package jalview.ws.jws2;
 
-import jalview.api.AlignCalcWorkerI;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.Annotation;
 import jalview.gui.AlignFrame;
@@ -50,8 +49,7 @@ import compbio.metadata.Argument;
  * 
  */
 
-public class RNAalifoldClient extends JabawsCalcWorker implements
-        AlignCalcWorkerI
+public class RNAalifoldClient extends JabawsCalcWorker
 {
 
   String methodName;
@@ -75,6 +73,7 @@ public class RNAalifoldClient extends JabawsCalcWorker implements
     initViewportParams();
   }
 
+  @Override
   public String getCalcId()
   {
     return CALC_ID;