From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 21 Jan 2014 23:40:58 +0000 (+0000)
Subject: in progress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=909718c34690db186df56680f8213727612d198f;p=jalview.git

in progress
---

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
index 6086534..45fa3ad 100644
--- a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
@@ -38,6 +38,8 @@ import java.util.Iterator;
 import java.util.List;
 import java.util.Map;
 import java.util.Set;
+import java.util.regex.Matcher;
+import java.util.regex.Pattern;
 
 import org.forester.io.parsers.PhylogenyParser;
 import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException;
@@ -1709,7 +1711,7 @@ public class PhylogenyMethods {
             return my_s.indexOf( my_query ) >= 0;
         }
         else {
-            return my_s.equals( my_query );
+            return Pattern.compile( "\\b" + my_query  + "\\b").matcher( my_s ).find();
         }
     }