From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 5 Oct 2012 20:04:53 +0000 (+0000)
Subject: blast
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=90de053d57aba278a3bb92c7b6c289674d69be5c;p=jalview.git

blast
---

diff --git a/forester/aptx/aptx_example_files/BLAST_examples.xml b/forester/aptx/aptx_example_files/BLAST_examples.xml
new file mode 100644
index 0000000..27096be
--- /dev/null
+++ b/forester/aptx/aptx_example_files/BLAST_examples.xml
@@ -0,0 +1,951 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
+<phylogeny rooted="true">
+  <clade>
+    <events>
+      <duplications>1</duplications>
+    </events>
+    <clade>
+      <branch_length>0.100405</branch_length>
+      <confidence type="unknown">100</confidence>
+      <events>
+        <duplications>1</duplications>
+      </events>
+      <clade>
+        <branch_length>0.41517</branch_length>
+        <confidence type="unknown">100</confidence>
+        <events>
+          <duplications>1</duplications>
+        </events>
+        <clade>
+          <branch_length>0.30159</branch_length>
+          <confidence type="unknown">97</confidence>
+          <events>
+            <duplications>1</duplications>
+          </events>
+          <clade>
+            <branch_length>0.15021</branch_length>
+            <confidence type="unknown">69</confidence>
+            <events>
+              <duplications>1</duplications>
+            </events>
+            <clade>
+              <branch_length>0.04885</branch_length>
+              <confidence type="unknown">68</confidence>
+              <events>
+                <speciations>1</speciations>
+              </events>
+              <clade>
+                <branch_length>0.04633</branch_length>
+                <confidence type="unknown">59</confidence>
+                <events>
+                  <speciations>1</speciations>
+                </events>
+                <clade>
+                  <branch_length>0.18918</branch_length>
+                  <confidence type="unknown">100</confidence>
+                  <events>
+                    <speciations>1</speciations>
+                  </events>
+                  <clade>
+                    <branch_length>0.07518</branch_length>
+                    <confidence type="unknown">97</confidence>
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+                    </events>
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+                      <branch_length>0.0073</branch_length>
+                      <confidence type="unknown">100</confidence>
+                      <events>
+                        <speciations>1</speciations>
+                      </events>
+                      <clade>
+                        <branch_length>0.0036</branch_length>
+                        <confidence type="unknown">91</confidence>
+                        <events>
+                          <speciations>1</speciations>
+                        </events>
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+                          <name>NP_001025424.1</name>
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+                          <sequence>
+                            <accession source="ncbi">ABJ16409.1</accession>
+                            <name>BCL2</name>
+                          </sequence>
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+</phylogeny>
+</phyloxml>
\ No newline at end of file