From: Jim Procter <jprocter@dundee.ac.uk>
Date: Tue, 15 Apr 2014 17:42:48 +0000 (+0100)
Subject: patch v1 for JAL-1474 - make sure we actually set the dataset sequence's string
X-Git-Tag: Jalview_2_9~123^2~46
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=918c7b4a347bec48eb12646947a0086acb62a084;p=jalview.git

patch v1 for JAL-1474 - make sure we actually set the dataset sequence's string
---

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 8bbf735..c7fa090 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -3763,7 +3763,7 @@ public class Jalview2XML
            * sb.append(newres.substring(newres.length() - sq.getEnd() -
            * dsq.getEnd())); dsq.setEnd(sq.getEnd()); }
            */
-          dsq.setSequence(sb.toString());
+          dsq.setSequence(newres);
         }
         // TODO: merges will never happen if we 'know' we have the real dataset
         // sequence - this should be detected when id==dssid