From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 4 Dec 2012 11:44:42 +0000 (+0000)
Subject: JAL-1214 todo
X-Git-Tag: Jalview_2_9~221^2^2~8^2~19
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=92119b0f39eca0a838988a606c8b83c43ff6ee37;p=jalview.git

JAL-1214 todo
---

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index 1d95f40..fc286a8 100755
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -233,6 +233,7 @@ public class PDBfile extends jalview.io.AlignFile
   private void processPdbFileWithAnnotate3d(ArrayList<SequenceI> rna) throws Exception {
 //    System.out.println("this is a PDB format and RNA sequence");
     Annotate3D an3d = new Annotate3D();
+    // TODO: use the PDB ID of the structure if one is available, to save bandwidth and avoid uploading the whole structure to the service
     AlignmentI al = an3d.getRNAMLFor(new FileParse(getDataName(),type));
     replaceMatchingSeqsWith(rna, al, AlignSeq.DNA);
   }