From: Jim Procter <jprocter@issues.jalview.org>
Date: Sun, 28 Jun 2015 16:21:31 +0000 (+0100)
Subject: JAL-1705 test that the regex correctly processes ENSEMBL test IDs
X-Git-Tag: Release_2_10_0~296^2~90^2~6
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9238f37da75fca644d970371f6b8e99144070bce;p=jalview.git

JAL-1705 test that the regex correctly processes ENSEMBL test IDs
---

diff --git a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
index 7e8745e..b456919 100644
--- a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
+++ b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java
@@ -155,4 +155,31 @@ public class EnsemblSeqProxyTest
 
     }
   }
+
+  @Test(dataProvider = "ens_seqs")
+  public void testRegexForProxy(EnsemblSeqType type, String sq,
+          String fastasq) throws Exception
+  {
+    EnsemblSeqProxy esq = new EnsemblProtein();
+    Assert.assertTrue(esq.isValidReference(sq),
+            "Expected reference string " + sq + " to be valid for regex "
+                    + esq.getAccessionValidator().toString());
+    
+    Assert.assertEquals(sq, DBRefUtils.processQueryToAccessionFor(esq, sq),
+            "Regex for " + esq.getClass().toString() + " not correct.");
+  }
+  // @Test(dataProvider = "ens_seqs", suiteName = "live")
+  // public void testGetOneSeqs(EnsemblSeqType type, String sq, String fastasq)
+  // throws Exception
+  // {
+  //
+  // {
+  // Assert.assertTrue(rseq[0].getDBRef() != null
+  // && rseq[0].getDBRef().length > 0,
+  // "No database references added to sequence by fetcher.");
+  // Assert.assertNotNull(DBRefUtils.searchRefs(rseq[0].getDBRef(),
+  // new DBRefEntry("ENSEMBL", null, sq)),
+  // "Could't find database references added to sequence by fetcher.");
+  //
+  // }
 }
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