From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 29 Jul 2020 16:46:33 +0000 (+0100)
Subject: JAL-3675 mention -open argument in the command line arguments table
X-Git-Tag: Release_2_11_1_1~13^2~34
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=926903049560168a78c564b6be86776bfaac7252;p=jalview.git

JAL-3675 mention -open argument in the command line arguments table
---

diff --git a/help/help/html/features/clarguments.html b/help/help/html/features/clarguments.html
index 60db069..5c9e314 100644
--- a/help/help/html/features/clarguments.html
+++ b/help/help/html/features/clarguments.html
@@ -34,6 +34,11 @@
   parameters, then include it at the beginning of the command line to
   ensure they are processed before any remaining arguments.
   <br>
+  Typical command line execution follows the following pattern:
+  <pre>
+  jalview -open &lt;Alignment File/URL&gt; [additional import arguments] [export arguments]
+  </pre>
+  
   <table width="100%" border="1" cellspacing="0" cellpadding="0">
     <tr>
       <td width="27%"><div align="center">-nodisplay</div></td>
@@ -41,7 +46,11 @@
           User Interface. (automatically disables questionnaire, version
           and usage stats checks)</div></td>
     </tr>
-
+    <tr>
+      <td><div align="center">-open FILE/URL</div></td>
+      <td><div align="left">Specify the alignment file to
+          open or process by providing additional arguments.</div></td>
+    </tr>
     <tr>
       <td><div align="center">-props FILE/URL</div></td>
       <td><div align="left">Use the given Jalview properties