From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 23 Nov 2016 17:14:12 +0000 (+0000)
Subject: JAL-2325 updated what’s new for 2.10.1
X-Git-Tag: Release_2_10_1~8^2~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=947ae75e0aab2336bfead4d4f303d028d0eb58ca;p=jalview.git

JAL-2325 updated what’s new for 2.10.1
---

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 84dad7d..e8b9c96 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -27,18 +27,34 @@
     <strong>What's new in Jalview 2.10.1 ?</strong>
   </p>
   <p>
-    Jalview 2.10.1 was released on 24th November 2016. Full details are in the <a
-      href="releases.html#Jalview.2.10.1">Jalview 2.10.1 Release
-      Notes</a>, but the highlights are below.
+    Jalview 2.10.1 was released on 24th November 2016. Full details are
+    in the <a href="releases.html#Jalview.2.10.1">Jalview 2.10.1
+      Release Notes</a>, but the highlights are below. This is also the
+    first release to include contributions from Kira Mour&atilde;o, who
+    joined Jalview's core development team in October 2016.
   </p>
   <ul>
-    <li></li>
-    <li><strong>New custom link mechanism for opening URLs for database
-      cross references.</strong><br/> If you have already customised the URL link menu
-      in your Jalview preferences, then you'll already have seen the <a
-      href="webServices/urllinks.html">Update your links warning
-        dialog.</a>
-    </li>
+    <li><strong>More memory efficient</strong><br />We've slimmed
+      down the consensus analysis data structures used by Jalview so
+      even wider alignments can be worked with.</li>
+    <li><strong>Select highlighted region</strong><br />Press 'B'
+      or use the new menu option in the alignment window's Select menu
+      to mark columns containing highlighted regions generated from
+      structure selections, mouse-overs, or resulting from a
+      Find operation.</li>
+    <li><strong>New custom link mechanism for opening URLs
+        for database cross references.</strong><br /> If you have customised URL
+      links in your Jalview preferences, then you may already have seen
+      the <a href="webServices/urllinks.html">Update your links
+        warning dialog.</a></li>
+    <li><strong>New command line export option for BioJS
+        MSAviewer</strong><br />A number of small bugs with the HTML export
+      functions from the Jalview desktop were also fixed.</li>
+    <li><strong>Small but significant changes to the
+        physicochemical properties and consensus calculations</strong><br />Threonine
+      is no longer considered a non-hydrophobic residue in the protein
+      conservation calculation, and minor bugs addressed in PID and
+      consensus colouring.</li>
   </ul>
 
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