From: amwaterhouse Date: Mon, 13 Jun 2005 11:31:48 +0000 (+0000) Subject: protected now public X-Git-Tag: Release_2_0~64 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=94f96a9c993be278b360ad15965715063db72520;p=jalview.git protected now public --- diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java index 81325d5..ab4bc59 100755 --- a/src/jalview/jbgui/GAlignFrame.java +++ b/src/jalview/jbgui/GAlignFrame.java @@ -46,8 +46,8 @@ public class GAlignFrame extends JInternalFrame { protected JMenuItem remove2RightMenuItem = new JMenuItem(); protected JMenuItem removeGappedColumnMenuItem = new JMenuItem(); protected JMenuItem removeAllGapsMenuItem = new JMenuItem(); - protected JCheckBoxMenuItem viewBoxesMenuItem = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem viewTextMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem viewBoxesMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem viewTextMenuItem = new JCheckBoxMenuItem(); protected JMenuItem sortPairwiseMenuItem = new JMenuItem(); protected JMenuItem sortIDMenuItem = new JMenuItem(); protected JMenuItem sortGroupMenuItem = new JMenuItem(); @@ -74,21 +74,21 @@ public class GAlignFrame extends JInternalFrame { protected JRadioButtonMenuItem BLOSUM62Colour = new JRadioButtonMenuItem(); JMenuItem njTreeBlosumMenuItem = new JMenuItem(); JMenuItem avDistanceTreeBlosumMenuItem = new JMenuItem(); - protected JCheckBoxMenuItem annotationPanelMenuItem = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem colourTextMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem annotationPanelMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem colourTextMenuItem = new JCheckBoxMenuItem(); JMenuItem htmlMenuItem = new JMenuItem(); JMenuItem overviewMenuItem = new JMenuItem(); protected JMenuItem undoMenuItem = new JMenuItem(); protected JMenuItem redoMenuItem = new JMenuItem(); - protected JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem(); JRadioButtonMenuItem noColourmenuItem = new JRadioButtonMenuItem(); - protected JCheckBoxMenuItem wrapMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem wrapMenuItem = new JCheckBoxMenuItem(); JMenuItem printMenuItem = new JMenuItem(); - protected JCheckBoxMenuItem renderGapsMenuItem = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem renderGapsMenuItem = new JCheckBoxMenuItem(); JMenuItem findMenuItem = new JMenuItem(); JMenu searchMenu = new JMenu(); - protected JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem(); protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem(); JMenuItem deleteGroups = new JMenuItem(); JMenuItem delete = new JMenuItem(); @@ -97,16 +97,16 @@ public class GAlignFrame extends JInternalFrame { JMenu jMenu1 = new JMenu(); JMenuItem pasteNew = new JMenuItem(); JMenuItem pasteThis = new JMenuItem(); - protected JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem(); JMenuItem createPNG = new JMenuItem(); protected JMenuItem font = new JMenuItem(); - protected JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem(); JMenuItem epsFile = new JMenuItem(); JMenuItem LoadtreeMenuItem = new JMenuItem(); JMenuItem jpred = new JMenuItem(); - protected JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem scaleLeft = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem scaleRight = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem scaleLeft = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem scaleRight = new JCheckBoxMenuItem(); JMenuItem modifyPID = new JMenuItem(); JMenuItem modifyConservation = new JMenuItem(); protected JMenu sortByTreeMenu = new JMenu(); @@ -219,6 +219,7 @@ public class GAlignFrame extends JInternalFrame { } catch (Exception e) { e.printStackTrace(); } + } private void jbInit() throws Exception {