From: jprocter <Jim Procter>
Date: Thu, 4 Dec 2008 10:22:16 +0000 (+0000)
Subject: minimise exceptions for bad uniprot ids
X-Git-Tag: Release_2_5~394
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=977dee6b8ae7d8eec93fe0e895993aae12d99372;p=jalview.git

minimise exceptions for bad uniprot ids
---

diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java
index ab0b10c..f7773d8 100644
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -116,8 +116,10 @@ public class Uniprot extends DbSourceProxyImpl implements DbSourceProxy
       Unmarshaller unmar = new Unmarshaller(uni);
       unmar.setIgnoreExtraElements(true);
       unmar.setMapping(map);
-
-      uni = (UniprotFile) unmar.unmarshal(new FileReader(file));
+      if (file!=null)
+      {
+        uni = (UniprotFile) unmar.unmarshal(new FileReader(file));
+      }
     } catch (Exception e)
     {
       System.out.println("Error getUniprotEntries() " + e);