From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Fri, 31 Jan 2014 16:34:26 +0000 (+0000)
Subject: Merge branch 'DAO'
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=986f73f677c2e0cc6bc452d3f2e0cf9b7a4108aa;hp=d1048dc77b419ac536dee9ce6fa3113613172b9c;p=proteocache.git

Merge branch 'DAO'

Conflicts:
	datadb/compbio/cassandra/CassandraReaderOld.java
---

diff --git a/WEB-INF/lib/webservices-rt.jar b/WEB-INF/lib/webservices-rt.jar
new file mode 100644
index 0000000..6741549
Binary files /dev/null and b/WEB-INF/lib/webservices-rt.jar differ
diff --git a/WEB-INF/lib/webservices-tools.jar b/WEB-INF/lib/webservices-tools.jar
new file mode 100644
index 0000000..e0426b8
Binary files /dev/null and b/WEB-INF/lib/webservices-tools.jar differ
diff --git a/WEB-INF/sun-jaxws.xml b/WEB-INF/sun-jaxws.xml
new file mode 100644
index 0000000..c6b4285
--- /dev/null
+++ b/WEB-INF/sun-jaxws.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<endpoints xmlns='http://java.sun.com/xml/ns/jax-ws/ri/runtime' version='2.0'>
+	<endpoint name='JpredWS'
+		implementation='compbio.ws.jpred.JpredWS'
+		url-pattern='/ProteoCacheWS'/>
+</endpoints>
diff --git a/WEB-INF/web.xml b/WEB-INF/web.xml
index 9f2caa5..0808c19 100644
--- a/WEB-INF/web.xml
+++ b/WEB-INF/web.xml
@@ -20,7 +20,10 @@
 	<listener>
 		<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
 	</listener>
-
+	<listener>
+		<listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
+	</listener>
+	
 	<context-param>
 		<param-name>contextConfigLocation</param-name>
 		<param-value>
@@ -67,6 +70,18 @@
 	<listener>
 		<listener-class>compbio.listeners.ContextListener</listener-class>
 	</listener>
+	<listener>
+		<listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
+	</listener>
+	<servlet>
+		<servlet-name>JpredWS</servlet-name>
+		<servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
+		<load-on-startup>1</load-on-startup>
+	</servlet>
+	<servlet-mapping>
+		<servlet-name>JpredWS</servlet-name>
+		<url-pattern>/JpredWS</url-pattern>
+	</servlet-mapping>
 
 	<!-- Session timeout in minutes -->
 	<session-config>
diff --git a/server/compbio/ws/jpred/Jpred.java b/server/compbio/ws/jpred/Jpred.java
new file mode 100644
index 0000000..cebac29
--- /dev/null
+++ b/server/compbio/ws/jpred/Jpred.java
@@ -0,0 +1,12 @@
+package compbio.ws.jpred;
+
+import javax.jws.WebMethod;
+import javax.jws.WebParam;
+import javax.jws.WebService;
+
+@WebService(targetNamespace = "http://server.proteocache.ws")
+public interface Jpred {
+	@WebMethod
+	public String findSequence(@WebParam(name = "sequence") String sequence, @WebParam(name = "program") String program,
+			@WebParam(name = "version") String version);
+}
diff --git a/server/compbio/ws/jpred/JpredClient.java b/server/compbio/ws/jpred/JpredClient.java
new file mode 100644
index 0000000..08948e8
--- /dev/null
+++ b/server/compbio/ws/jpred/JpredClient.java
@@ -0,0 +1,23 @@
+package compbio.ws.jpred;
+
+import javax.xml.ws.Service;
+import javax.xml.namespace.QName;
+
+import java.net.URL;
+
+/**
+ * 
+ */
+public class JpredClient {
+
+	public static void main(String[] args) throws Exception {
+		QName qname = new QName("http://server.proteocache.ws", "ProteoCacheWS");
+
+		Service service = Service.create(new URL("http://localhost:8080/proteocache-1.0/ProteoCacheWS"), qname);
+		Jpred sequense = service.getPort(Jpred.class);
+		String result = sequense.findSequence("EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCS", "Jpred", "3.0.1");
+
+		System.out.println("Result : " + result);
+	}
+
+}
diff --git a/server/compbio/ws/jpred/JpredWS.java b/server/compbio/ws/jpred/JpredWS.java
new file mode 100644
index 0000000..16e100f
--- /dev/null
+++ b/server/compbio/ws/jpred/JpredWS.java
@@ -0,0 +1,27 @@
+package compbio.ws.jpred;
+
+import javax.jws.WebService;
+
+import org.apache.log4j.Logger;
+
+import compbio.cassandra.CassandraNativeConnector;
+import compbio.cassandra.readers.SequenceReader;
+
+@WebService(endpointInterface = "compbio.ws.jpred.Jpred", targetNamespace = "http://server.proteocache.ws", serviceName = "ProteoCacheWS", portName = "ProteoCacheWSPort")
+public class JpredWS implements Jpred {
+	private static Logger log = Logger.getLogger(CassandraNativeConnector.class);
+
+	@Override
+	public String findSequence(String sequence, String program, String version) {
+		CassandraNativeConnector dbconnector = new CassandraNativeConnector();
+		SequenceReader reader = new SequenceReader();
+		reader.setSession(dbconnector.getSession());
+		log.debug("ProteoCacheWS is connected:\n search for sequence: " + sequence + "\ncalculated wih  " + program + " (version; "
+				+ version + ")");
+		if (null != reader.readProteins(sequence, "whole")) {
+			return "The sequence " + sequence + " found. Calculated with " + program + "(" + version + ")";
+		}
+		return "The sequence " + sequence + " not found";
+	}
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/FindJobForSequence.java b/server/compbio/ws/jpred/jaxws/FindJobForSequence.java
new file mode 100644
index 0000000..6142ff7
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/FindJobForSequence.java
@@ -0,0 +1,80 @@
+
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "findJobForSequence", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "findJobForSequence", namespace = "http://server.proteocache.ws", propOrder = {
+    "sequence",
+    "program",
+    "version"
+})
+public class FindJobForSequence {
+
+    @XmlElement(name = "sequence", namespace = "")
+    private String sequence;
+    @XmlElement(name = "program", namespace = "")
+    private String program;
+    @XmlElement(name = "version", namespace = "")
+    private String version;
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getSequence() {
+        return this.sequence;
+    }
+
+    /**
+     * 
+     * @param sequence
+     *     the value for the sequence property
+     */
+    public void setSequence(String sequence) {
+        this.sequence = sequence;
+    }
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getProgram() {
+        return this.program;
+    }
+
+    /**
+     * 
+     * @param program
+     *     the value for the program property
+     */
+    public void setProgram(String program) {
+        this.program = program;
+    }
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getVersion() {
+        return this.version;
+    }
+
+    /**
+     * 
+     * @param version
+     *     the value for the version property
+     */
+    public void setVersion(String version) {
+        this.version = version;
+    }
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/FindJobForSequenceResponse.java b/server/compbio/ws/jpred/jaxws/FindJobForSequenceResponse.java
new file mode 100644
index 0000000..d367d02
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/FindJobForSequenceResponse.java
@@ -0,0 +1,36 @@
+
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "findJobForSequenceResponse", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "findJobForSequenceResponse", namespace = "http://server.proteocache.ws")
+public class FindJobForSequenceResponse {
+
+    @XmlElement(name = "return", namespace = "")
+    private String _return;
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getReturn() {
+        return this._return;
+    }
+
+    /**
+     * 
+     * @param _return
+     *     the value for the _return property
+     */
+    public void setReturn(String _return) {
+        this._return = _return;
+    }
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/FindSequence.java b/server/compbio/ws/jpred/jaxws/FindSequence.java
new file mode 100644
index 0000000..d1b23d2
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/FindSequence.java
@@ -0,0 +1,78 @@
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "findSequence", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "findSequence", namespace = "http://server.proteocache.ws", propOrder = { "sequence", "program", "version" })
+public class FindSequence {
+
+	@XmlElement(name = "sequence", namespace = "")
+	private String sequence;
+	@XmlElement(name = "program", namespace = "")
+	private String program;
+	@XmlElement(name = "version", namespace = "")
+	private String version;
+
+	/**
+	 * 
+	 * @return returns String
+	 */
+	public String getSequence() {
+		System.out.println("FindSequence.setSequence: output sequence " + this.sequence);
+		return this.sequence;
+	}
+
+	/**
+	 * 
+	 * @param sequence
+	 *            the value for the sequence property
+	 */
+	public void setSequence(String sequence) {
+		System.out.println("FindSequence.setSequence: input sequence " + sequence);
+		this.sequence = sequence;
+	}
+
+	/**
+	 * 
+	 * @return returns String
+	 */
+	public String getProgram() {
+		System.out.println("FindSequence.setProgram: output program " + this.program);
+		return this.program;
+	}
+
+	/**
+	 * 
+	 * @param program
+	 *            the value for the program property
+	 */
+	public void setProgram(String program) {
+		System.out.println("FindSequence.setProgram: input program " + program);
+		this.program = program;
+	}
+
+	/**
+	 * 
+	 * @return returns String
+	 */
+	public String getVersion() {
+		System.out.println("FindSequence.setVersion: output version " + this.version);
+		return this.version;
+	}
+
+	/**
+	 * 
+	 * @param version
+	 *            the value for the version property
+	 */
+	public void setVersion(String version) {
+		System.out.println("FindSequence.setVersion: input version " + version);
+		this.version = version;
+	}
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/FindSequenceResponse.java b/server/compbio/ws/jpred/jaxws/FindSequenceResponse.java
new file mode 100644
index 0000000..7889071
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/FindSequenceResponse.java
@@ -0,0 +1,36 @@
+
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "findSequenceResponse", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "findSequenceResponse", namespace = "http://server.proteocache.ws")
+public class FindSequenceResponse {
+
+    @XmlElement(name = "return", namespace = "")
+    private String _return;
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getReturn() {
+        return this._return;
+    }
+
+    /**
+     * 
+     * @param _return
+     *     the value for the _return property
+     */
+    public void setReturn(String _return) {
+        this._return = _return;
+    }
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/GetArchive.java b/server/compbio/ws/jpred/jaxws/GetArchive.java
new file mode 100644
index 0000000..2fab038
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/GetArchive.java
@@ -0,0 +1,36 @@
+
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "getArchive", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "getArchive", namespace = "http://server.proteocache.ws")
+public class GetArchive {
+
+    @XmlElement(name = "job", namespace = "")
+    private String job;
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getJob() {
+        return this.job;
+    }
+
+    /**
+     * 
+     * @param job
+     *     the value for the job property
+     */
+    public void setJob(String job) {
+        this.job = job;
+    }
+
+}
diff --git a/server/compbio/ws/jpred/jaxws/GetArchiveResponse.java b/server/compbio/ws/jpred/jaxws/GetArchiveResponse.java
new file mode 100644
index 0000000..ac6b0db
--- /dev/null
+++ b/server/compbio/ws/jpred/jaxws/GetArchiveResponse.java
@@ -0,0 +1,36 @@
+
+package compbio.ws.jpred.jaxws;
+
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlElement;
+import javax.xml.bind.annotation.XmlRootElement;
+import javax.xml.bind.annotation.XmlType;
+
+@XmlRootElement(name = "getArchiveResponse", namespace = "http://server.proteocache.ws")
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "getArchiveResponse", namespace = "http://server.proteocache.ws")
+public class GetArchiveResponse {
+
+    @XmlElement(name = "return", namespace = "")
+    private String _return;
+
+    /**
+     * 
+     * @return
+     *     returns String
+     */
+    public String getReturn() {
+        return this._return;
+    }
+
+    /**
+     * 
+     * @param _return
+     *     the value for the _return property
+     */
+    public void setReturn(String _return) {
+        this._return = _return;
+    }
+
+}
diff --git a/server/compbio/ws/resources/ProteoCacheWS.wsdl b/server/compbio/ws/resources/ProteoCacheWS.wsdl
new file mode 100644
index 0000000..c456e47
--- /dev/null
+++ b/server/compbio/ws/resources/ProteoCacheWS.wsdl
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is Metro/2.1 (branches/2.1-6728; 2011-02-03T14:14:58+0000) JAXWS-RI/2.2.3 JAXWS/2.2. -->
+<definitions targetNamespace="http://server.proteocache.ws" name="ProteoCacheWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://server.proteocache.ws" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
+  <types>
+    <xsd:schema>
+      <xsd:import namespace="http://server.proteocache.ws" schemaLocation="ProteoCacheWS_schema1.xsd"/>
+    </xsd:schema>
+  </types>
+  <message name="findSequence">
+    <part name="parameters" element="tns:findSequence"/>
+  </message>
+  <message name="findSequenceResponse">
+    <part name="parameters" element="tns:findSequenceResponse"/>
+  </message>
+  <portType name="Jpred">
+    <operation name="findSequence">
+      <input wsam:Action="http://server.proteocache.ws/Jpred/findSequenceRequest" message="tns:findSequence"/>
+      <output wsam:Action="http://server.proteocache.ws/Jpred/findSequenceResponse" message="tns:findSequenceResponse"/>
+    </operation>
+  </portType>
+  <binding name="ProteoCacheWSPortBinding" type="tns:Jpred">
+    <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
+    <operation name="findSequence">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+    </operation>
+  </binding>
+  <service name="ProteoCacheWS">
+    <port name="ProteoCacheWSPort" binding="tns:ProteoCacheWSPortBinding">
+      <soap:address location="REPLACE_WITH_ACTUAL_URL"/>
+    </port>
+  </service>
+</definitions>
+
diff --git a/server/compbio/ws/resources/ProteoCacheWS_schema1.xsd b/server/compbio/ws/resources/ProteoCacheWS_schema1.xsd
new file mode 100644
index 0000000..d9ee154
--- /dev/null
+++ b/server/compbio/ws/resources/ProteoCacheWS_schema1.xsd
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<xs:schema version="1.0" targetNamespace="http://server.proteocache.ws" xmlns:tns="http://server.proteocache.ws" xmlns:xs="http://www.w3.org/2001/XMLSchema">
+
+  <xs:element name="findSequence" type="tns:findSequence"/>
+
+  <xs:element name="findSequenceResponse" type="tns:findSequenceResponse"/>
+
+  <xs:complexType name="findSequence">
+    <xs:sequence>
+      <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+      <xs:element name="program" type="xs:string" minOccurs="0"/>
+      <xs:element name="version" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="findSequenceResponse">
+    <xs:sequence>
+      <xs:element name="return" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+</xs:schema>
+
diff --git a/webapp/resources/JpredWS.wsdl b/webapp/resources/JpredWS.wsdl
new file mode 100644
index 0000000..98b4f77
--- /dev/null
+++ b/webapp/resources/JpredWS.wsdl
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is Metro/2.1 (branches/2.1-6728; 2011-02-03T14:14:58+0000) JAXWS-RI/2.2.3 JAXWS/2.2. -->
+<definitions targetNamespace="http://server.ws.compbio" name="JpredWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://server.ws.compbio" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
+  <types>
+    <xsd:schema>
+      <xsd:import namespace="http://server.ws.compbio" schemaLocation="JpredWS_schema1.xsd"/>
+    </xsd:schema>
+  </types>
+  <message name="findSequence">
+    <part name="parameters" element="tns:findSequence"/>
+  </message>
+  <message name="findSequenceResponse">
+    <part name="parameters" element="tns:findSequenceResponse"/>
+  </message>
+  <portType name="Jpred">
+    <operation name="findSequence">
+      <input wsam:Action="http://server.ws.compbio/Jpred/findSequenceRequest" message="tns:findSequence"/>
+      <output wsam:Action="http://server.ws.compbio/Jpred/findSequenceResponse" message="tns:findSequenceResponse"/>
+    </operation>
+  </portType>
+  <binding name="JpredWSPortBinding" type="tns:Jpred">
+    <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
+    <operation name="findSequence">
+      <soap:operation soapAction=""/>
+      <input>
+        <soap:body use="literal"/>
+      </input>
+      <output>
+        <soap:body use="literal"/>
+      </output>
+    </operation>
+  </binding>
+  <service name="JpredWS">
+    <port name="JpredWSPort" binding="tns:JpredWSPortBinding">
+      <soap:address location="REPLACE_WITH_ACTUAL_URL"/>
+    </port>
+  </service>
+</definitions>
+
diff --git a/webapp/resources/JpredWS_schema1.xsd b/webapp/resources/JpredWS_schema1.xsd
new file mode 100644
index 0000000..7d32d9c
--- /dev/null
+++ b/webapp/resources/JpredWS_schema1.xsd
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
+<xs:schema version="1.0" targetNamespace="http://server.ws.compbio" xmlns:tns="http://server.ws.compbio" xmlns:xs="http://www.w3.org/2001/XMLSchema">
+
+  <xs:element name="findSequence" type="tns:findSequence"/>
+
+  <xs:element name="findSequenceResponse" type="tns:findSequenceResponse"/>
+
+  <xs:complexType name="findSequence">
+    <xs:sequence>
+      <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="findSequenceResponse">
+    <xs:sequence>
+      <xs:element name="return" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+</xs:schema>
+
diff --git a/webapp/view/reports/Job.jsp b/webapp/view/reports/Job.jsp
index e042564..4afbb89 100644
--- a/webapp/view/reports/Job.jsp
+++ b/webapp/view/reports/Job.jsp
@@ -10,7 +10,13 @@
 <jsp:include page="../fragments/header.jsp" />
 <body>
 	<div class="container">
-		<jsp:include page="../fragments/mainmenu.jsp" />
+		<sec:authorize access="hasRole('ROLE_USER')">
+			<jsp:include page="../fragments/mainmenu.jsp" />
+		</sec:authorize>
+		<sec:authorize access="isAnonymous()">
+			<jsp:include page="../fragments/publicmenu.jsp" />
+		</sec:authorize>
+
 		<spring:url value="/sequence/results" var="sequence_query" />
 		<spring:url value="/admin/ip/results" var="ip_query" />
 		<spring:url value="/job/results?IdJob=${IdJob}" var="the_query" />
diff --git a/wsbuild.xml b/wsbuild.xml
new file mode 100644
index 0000000..0f5037d
--- /dev/null
+++ b/wsbuild.xml
@@ -0,0 +1,57 @@
+<?xml version="1.0"?>
+
+<project default="main" name="compbio-ws" basedir=".">
+	
+	<!-- java -->
+		<property name="classes" location="${basedir}/WEB-INF/classes" />
+		<property name="lib.path" location="${basedir}/WEB-INF/lib" />
+
+		<path id="classes.path">
+			<pathelement location="${classes}" />
+		</path>
+
+		<!-- add libraries -->
+		<path id="project.classpath">
+			<fileset dir="${lib.path}">
+				<include name="*.jar" />
+			</fileset>
+		</path>
+
+		<property name="wsdl.dir" location="${basedir}/server/compbio/ws/resources" />
+		<property name="jpred.wsdl" location="${wsdl.dir}/ProteoCacheWS.wsdl" />
+
+		<taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">
+			<classpath refid="project.classpath" />
+		</taskdef>
+
+		<target name="main">
+			<!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->
+			<property name="server.artifacts.dir" location="${basedir}/server/compbio/ws/jpred/jaxws/" />
+
+			<mkdir dir="${server.artifacts.dir}" />
+			<mkdir dir="${wsdl.dir}" />
+			<delete quiet="false" verbose="true" failonerror="false">
+				<fileset dir="${server.artifacts.dir}">
+					<include name="*.java" />
+				</fileset>
+				<fileset dir="${wsdl.dir}">
+				</fileset>
+			</delete>
+
+			<!-- destdir - Where to put generated classes -->
+			<!-- sourcedestdir -  Where to put generated source files -->
+			<!-- resourcedestdir - Where to put generated source files -->
+			<wsgen sei="compbio.ws.jpred.JpredWS"
+					sourcedestdir="${basedir}/server"
+					destdir="${classes}"
+					resourcedestdir="${wsdl.dir}"
+					keep="true"
+					genwsdl="true"
+					extension="false"
+					xendorsed="true"
+					verbose="true"> 
+					<classpath refid="classes.path" />
+					<classpath refid="project.classpath" />
+			</wsgen>
+		</target>	
+	</project>