From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 18 Jul 2016 15:29:15 +0000 (+0100)
Subject: JAL-2068 clarify comments
X-Git-Tag: Release_2_10_0~138^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=989dfdcbd007d4530dae7f0d8a64df55c7136703;p=jalview.git

JAL-2068 clarify comments
---

diff --git a/examples/groovy/featureCounter.groovy b/examples/groovy/featureCounter.groovy
index 42d3187..3b5bca6 100644
--- a/examples/groovy/featureCounter.groovy
+++ b/examples/groovy/featureCounter.groovy
@@ -45,7 +45,8 @@ def hasPfam = { features ->
 }
 
 /*
- * Closure that counts residues with a Pfam feature annotation
+ * Closure that computes an annotation based on 
+ * presence of particular residues and features
  * Parameters are
  * - the name (label) for the alignment annotation
  * - the description (tooltip) for the annotation
@@ -74,12 +75,12 @@ def getColumnCounter = { name, desc, acceptResidue, acceptFeatures ->
 }
 
 /*
- * Define an annotation that counts any residue with Pfam domain annotation
+ * Define an annotation row that counts any residue with Pfam domain annotation
  */
 def pfamAnnotation = getColumnCounter("Pfam", "Count of residues with Pfam domain annotation", {true}, hasPfam)
 
 /*
- * Define an annotation that counts charged residues with Pfam domain annotation
+ * Define an annotation row that counts charged residues with Pfam domain annotation
  */
 def chargedPfamAnnotation = getColumnCounter("Pfam charged", "Count of charged residues with Pfam domain annotation", isCharged, hasPfam)