From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 4 Jul 2016 14:19:43 +0000 (+0100)
Subject: JAL-2110 defensive check in code
X-Git-Tag: Release_2_10_0~140^2~5^2~26
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=989fb9284f5e443886fcaa9cf4ca495c75c76f71;p=jalview.git

JAL-2110 defensive check in code
---

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 18aaecf..bb705b6 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -472,7 +472,8 @@ public class AlignedCodonFrame
 
     for (SequenceToSequenceMapping ssm : mappings)
     {
-      if (ssm.mapping.to == protein)
+      if (ssm.mapping.to == protein
+              && ssm.mapping.getMap().getFromRatio() == 3)
       {
         ml = ssm.mapping.map;
         dnaSeq = ssm.fromSeq;