From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 9 Jul 2014 03:12:13 +0000 (+0000)
Subject: RETFI added
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9a2a3ad35f66b384825154439cc284269d29e71e;p=jalview.git

RETFI added
---

diff --git a/forester/data/surfacing/genome_locations.txt b/forester/data/surfacing/genome_locations.txt
index 7c19b16..93df656 100644
--- a/forester/data/surfacing/genome_locations.txt
+++ b/forester/data/surfacing/genome_locations.txt
@@ -1,4 +1,4 @@
-# Last updated: 140319
+# Last updated: 140708
 #
 # Ophistokonta::Animals (mammals)
 BOVIN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BOVIN.fasta
@@ -208,7 +208,7 @@ ENTBH   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/E
 ENTDS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTDS.fasta
 ENTHI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ENTHI.fasta
 POLPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/POLPA.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
 AMBTC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AMBTC.fasta
 AQUCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AQUCA.fasta
 ARALY   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARALY.fasta
@@ -240,7 +240,7 @@ SORBI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/S
 SOYBN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/SOYBN.fasta
 THEHA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEHA.fasta
 VITVI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VITVI.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
 ASCXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ASCXX.fasta
 CHLRE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLRE.fasta
 CHLVA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CHLVA.fasta
@@ -251,9 +251,9 @@ ORCXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/O
 OSTLU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTLU.fasta
 OSTTA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/OSTTA.fasta
 VOLCA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/VOLCA.fasta
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
 CYAME   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/CYAME.fasta
-# Corticata::Chromalveolates
+# Chromalveolates
 AKEXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AKEXX.fasta
 ALIXX   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ALIXX.fasta
 AURAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AURAN.fasta
@@ -287,7 +287,7 @@ THAPS   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/T
 THEAN   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEAN.fasta
 THEPA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/THEPA.fasta
 TOXGO   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TOXGO.fasta
-# Cabozoa::Excavata
+# Excavata
 BODSA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BODSA.fasta
 GIAIC   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/GIAIC.fasta
 LEIBR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/LEIBR.fasta
@@ -296,8 +296,9 @@ LEIMA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/L
 NAEGR   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/NAEGR.fasta
 TRIVA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRIVA.fasta
 TRYB2   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/TRYB2.fasta
-# Cabozoa::Rhizaria
+# Rhizaria
 BIGNA   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/BIGNA.fasta
+RETFI   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/RETFI.fasta
 # Archaea
 AERPE   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/AERPE.fasta
 ARCFU   /home/czmasek/DATA/SEQUENCES/GENOMES/PROTEIN_PREDICTIONS_CDHIT_095/ALL/ARCFU.fasta
diff --git a/forester/data/surfacing/genome_locations_eos.txt b/forester/data/surfacing/genome_locations_eos.txt
index 54c982f..7eb9f45 100644
--- a/forester/data/surfacing/genome_locations_eos.txt
+++ b/forester/data/surfacing/genome_locations_eos.txt
@@ -1,4 +1,4 @@
-# Last updated: 140319
+# Last updated: 140708
 #
 # Ophistokonta::Animals (mammals)
 BOVIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOVIN.fasta
@@ -208,7 +208,7 @@ ENTBH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTBH.fasta
 ENTDS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTDS.fasta
 ENTHI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTHI.fasta
 POLPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/POLPA.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
 AMBTC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AMBTC.fasta
 AQUCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AQUCA.fasta
 ARALY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARALY.fasta
@@ -240,7 +240,7 @@ SORBI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SORBI.fasta
 SOYBN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOYBN.fasta
 THEHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEHA.fasta
 VITVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VITVI.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
 ASCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASCXX.fasta
 CHLRE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLRE.fasta
 CHLVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLVA.fasta
@@ -251,9 +251,9 @@ ORCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORCXX.fasta
 OSTLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTLU.fasta
 OSTTA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTTA.fasta
 VOLCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VOLCA.fasta
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
 CYAME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYAME.fasta
-# Corticata::Chromalveolates
+# Chromalveolates
 AKEXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AKEXX.fasta
 ALIXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALIXX.fasta
 AURAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AURAN.fasta
@@ -287,7 +287,7 @@ THAPS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THAPS.fasta
 THEAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEAN.fasta
 THEPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEPA.fasta
 TOXGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TOXGO.fasta
-# Cabozoa::Excavata
+# Excavata
 BODSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BODSA.fasta
 GIAIC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GIAIC.fasta
 LEIBR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIBR.fasta
@@ -296,8 +296,9 @@ LEIMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIMA.fasta
 NAEGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NAEGR.fasta
 TRIVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIVA.fasta
 TRYB2   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRYB2.fasta
-# Cabozoa::Rhizaria
+# Rhizaria
 BIGNA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BIGNA.fasta
+RETFI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RETFI.fasta
 # Archaea
 AERPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AERPE.fasta
 ARCFU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARCFU.fasta
diff --git a/forester/data/surfacing/genomes_all.txt b/forester/data/surfacing/genomes_all.txt
index 59c4afa..2539986 100644
--- a/forester/data/surfacing/genomes_all.txt
+++ b/forester/data/surfacing/genomes_all.txt
@@ -1,4 +1,4 @@
-# Last updated: 140319
+# Last updated: 140708
 #
 # Ophistokonta::Animals (mammals)
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOVIN.hmmscan    BOVIN
@@ -204,7 +204,7 @@
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTDS.hmmscan    ENTDS
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTHI.hmmscan    ENTHI
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POLPA.hmmscan    POLPA
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMBTC.hmmscan    AMBTC
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUCA.hmmscan    AQUCA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARALY.hmmscan    ARALY
@@ -236,7 +236,7 @@
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOYBN.hmmscan    SOYBN
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEHA.hmmscan    THEHA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITVI.hmmscan    VITVI
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASCXX.hmmscan    ASCXX
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLRE.hmmscan    CHLRE
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLVA.hmmscan    CHLVA
@@ -247,9 +247,9 @@
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTLU.hmmscan    OSTLU
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTTA.hmmscan    OSTTA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VOLCA.hmmscan    VOLCA
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYAME.hmmscan    CYAME
-# Corticata::Chromalveolates
+# Chromalveolates
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKEXX.hmmscan    AKEXX
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALIXX.hmmscan    ALIXX
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AURAN.hmmscan    AURAN
@@ -283,7 +283,7 @@
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAN.hmmscan    THEAN
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPA.hmmscan    THEPA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TOXGO.hmmscan    TOXGO
-# Cabozoa::Excavata
+# Excavata
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BODSA.hmmscan    BODSA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIAIC.hmmscan    GIAIC
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIBR.hmmscan    LEIBR
@@ -292,8 +292,9 @@
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAEGR.hmmscan    NAEGR
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIVA.hmmscan    TRIVA
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRYB2.hmmscan    TRYB2
-# Cabozoa::Rhizaria
+# Rhizaria
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIGNA.hmmscan    BIGNA
+/home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RETFI.hmmscan    RETFI
 # Archaea
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AERPE.hmmscan    AERPE
 /home/czmasek/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARCFU.hmmscan    ARCFU
diff --git a/forester/data/surfacing/genomes_eos_all.txt b/forester/data/surfacing/genomes_eos_all.txt
index 2b9fe4b..9cad5d5 100644
--- a/forester/data/surfacing/genomes_eos_all.txt
+++ b/forester/data/surfacing/genomes_eos_all.txt
@@ -1,4 +1,4 @@
-# Last updated: 140319
+# Last updated: 140708
 #
 # Ophistokonta::Animals (mammals)
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BOVIN.hmmscan    BOVIN
@@ -204,7 +204,7 @@
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTDS.hmmscan    ENTDS
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ENTHI.hmmscan    ENTHI
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/POLPA.hmmscan    POLPA
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Archaeplastida::Viridaeplantae::Streptophyta
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AMBTC.hmmscan    AMBTC
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AQUCA.hmmscan    AQUCA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARALY.hmmscan    ARALY
@@ -236,7 +236,7 @@
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/SOYBN.hmmscan    SOYBN
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEHA.hmmscan    THEHA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VITVI.hmmscan    VITVI
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Archaeplastida::Viridaeplantae::Chlorophyta
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ASCXX.hmmscan    ASCXX
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLRE.hmmscan    CHLRE
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CHLVA.hmmscan    CHLVA
@@ -247,9 +247,9 @@
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTLU.hmmscan    OSTLU
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/OSTTA.hmmscan    OSTTA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/VOLCA.hmmscan    VOLCA
-# Corticata::Archaeplastida::Rhodophyta
+# Archaeplastida::Rhodophyta
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/CYAME.hmmscan    CYAME
-# Corticata::Chromalveolates
+# Chromalveolates
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AKEXX.hmmscan    AKEXX
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ALIXX.hmmscan    ALIXX
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AURAN.hmmscan    AURAN
@@ -283,7 +283,7 @@
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEAN.hmmscan    THEAN
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/THEPA.hmmscan    THEPA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TOXGO.hmmscan    TOXGO
-# Cabozoa::Excavata
+# Excavata
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BODSA.hmmscan    BODSA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/GIAIC.hmmscan    GIAIC
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/LEIBR.hmmscan    LEIBR
@@ -292,8 +292,9 @@
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/NAEGR.hmmscan    NAEGR
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRIVA.hmmscan    TRIVA
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/TRYB2.hmmscan    TRYB2
-# Cabozoa::Rhizaria
+# Rhizaria
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/BIGNA.hmmscan    BIGNA
+/home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/RETFI.hmmscan    RETFI
 # Archaea
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/AERPE.hmmscan    AERPE
 /home/czmasek/PUBLIC/DATA/GENOME_HMMSCAN/CDHIT_095_PFAM270X/ARCFU.hmmscan    ARCFU