From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 30 Aug 2013 11:33:28 +0000 (+0100)
Subject: JAL-1367 clear the current representative sequence
X-Git-Tag: Jalview_2_9~108^2~27^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9cbe7b851c119115631c2af7e30ef4a806496bde;hp=d0ca314722db4921c6c3944e37e1d409b5e17653;p=jalview.git

JAL-1367 clear the current representative sequence
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index ceb08ee..05799a8 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5500,7 +5500,15 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       alignPanel.paintAlignment(true);
     }
   }
-
+  public void clearAlignmentSeqRep()
+  {
+    if (viewport.getAlignment().hasSeqrep()) {
+      viewport.getAlignment().setSeqrep(null);
+      PaintRefresher.Refresh(this, viewport.getSequenceSetId());
+      alignPanel.updateAnnotation();
+      alignPanel.paintAlignment(true);
+    }
+  }
   /**
    * make the given alignmentPanel the currently selected tab
    *