From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 5 Mar 2020 12:14:11 +0000 (+0000)
Subject: JAL-3548 start an http server for posting gene ids to retrieve from ensembl and displ... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9e19bd7c9421b47f1e062a046c589a75c546026b;p=jalview.git

JAL-3548 start an http server for posting gene ids to retrieve from ensembl and display in Jalview
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diff --git a/examples/groovy/simpleHttpServlet.groovy b/examples/groovy/simpleHttpServlet.groovy
new file mode 100644
index 0000000..556f78b
--- /dev/null
+++ b/examples/groovy/simpleHttpServlet.groovy
@@ -0,0 +1,45 @@
+import org.eclipse.jetty.server.Server
+import org.eclipse.jetty.servlet.*
+import groovy.servlet.*
+import javax.servlet.http.*
+import javax.servlet.api.*
+import javax.servlet.ServletConfig
+ 
+class SimpleGroovyServlet extends HttpServlet {
+    def requestHandler
+    def context
+    void init(ServletConfig config) {
+        super.init(config)
+        context = config.servletContext
+    }
+    void service(HttpServletRequest request, HttpServletResponse response) {
+        requestHandler.binding = new ServletBinding(request, response, context)
+        use (ServletCategory) {
+            requestHandler.call()
+        }
+    }
+    static void run(int port, Closure requestHandler) {
+        ours = requestHandler;
+        def servlet = new SimpleGroovyServlet(requestHandler: requestHandler)
+        def jetty = new Server(port)
+//        def handler = new ServletHandler()
+//        jetty.setHandler(handler)
+        
+        def context = new ServletContextHandler(jetty, '/', ServletContextHandler.SESSIONS)
+        context.addServlet(new ServletHolder(servlet), '/*')
+        jetty.start()
+    }
+    static Closure ours;
+}
+
+if ( SimpleGroovyServlet.ours == null ) {
+SimpleGroovyServlet.run(8878, { ->
+    response.contentType = 'text/plain'
+    println "Retrieving ENSEMBL ${params.name}"
+//    println "my path is ${request.pathInfo}"
+//    println "my params are $params"
+    jalview.gui.SequenceFetcher.fetchAndShow("ENSEMBL",""+params.get("name"))
+})
+} else {
+  print "Already running."
+}
\ No newline at end of file
diff --git a/j11lib/jetty-security-9.2.11.v20150529.jar b/j11lib/jetty-security-9.2.11.v20150529.jar
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diff --git a/j11lib/jetty-servlet-9.2.11.v20150529.jar b/j11lib/jetty-servlet-9.2.11.v20150529.jar
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diff --git a/j8lib/jetty-security-9.2.11.v20150529.jar b/j8lib/jetty-security-9.2.11.v20150529.jar
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diff --git a/j8lib/jetty-servlet-9.2.11.v20150529.jar b/j8lib/jetty-servlet-9.2.11.v20150529.jar
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