From: gmungoc Date: Wed, 5 Oct 2016 10:23:53 +0000 (+0100) Subject: JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because X-Git-Tag: Release_2_10_0~18 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9e5253dce9d7547e3191d596ed10f73e4af0cc1d;p=jalview.git JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because Ensembl now returning coding features as mRNA not transcript!) --- diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java index b3f8161..2c972ad 100644 --- a/src/jalview/io/gff/SequenceOntologyLite.java +++ b/src/jalview/io/gff/SequenceOntologyLite.java @@ -51,6 +51,7 @@ public class SequenceOntologyLite implements SequenceOntologyI { "miRNA", "transcript" }, { "lincRNA", "transcript" }, { "rRNA", "transcript" }, + { "mRNA", "transcript" }, // there are many more sub-types of ncRNA... /*