From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 21 Aug 2017 13:22:52 +0000 (+0100)
Subject: JAL-2588 don’t test char==gap until we know the shader won’t colour gaps itself
X-Git-Tag: Release_2_10_3b1~142^2~2^2~9^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9e95025ca7a686639c1acdc630db8edde72ffc61;p=jalview.git

JAL-2588 don’t test char==gap until we know the shader won’t colour gaps itself
---

diff --git a/.ant-targets-build.xml b/.ant-targets-build.xml
new file mode 100644
index 0000000..15432a1
--- /dev/null
+++ b/.ant-targets-build.xml
@@ -0,0 +1,31 @@
+build
+buildPropertiesFile
+buildTests
+buildextclients
+buildindices
+castorbinding
+clean
+compileApplet
+distclean
+help
+init
+linkcheck
+makeApplet
+makedist
+makefulldist
+obfuscate
+packageApplet
+prepare
+prepareTests
+preparejnlp
+prepubapplet_1
+pubapplet
+runenv
+signApplet
+sourcedist
+sourcedoc
+sourcescrub
+testclean
+testng
+usage
+writejnlpf
diff --git a/src/jalview/renderer/OverviewResColourFinder.java b/src/jalview/renderer/OverviewResColourFinder.java
index ec638a7..c591f54 100644
--- a/src/jalview/renderer/OverviewResColourFinder.java
+++ b/src/jalview/renderer/OverviewResColourFinder.java
@@ -41,8 +41,8 @@ public class OverviewResColourFinder extends ResidueColourFinder
     // settings
     if (shader.getColourScheme() != null)
     {
-      if (Comparison.isGap(currentChar)
-              && !shader.getColourScheme().hasGapColour())
+      if (!shader.getColourScheme().hasGapColour()
+              && Comparison.isGap(currentChar))
       {
         resBoxColour = GAP_COLOUR;
       }