From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 28 Jun 2018 15:48:06 +0000 (+0100)
Subject: JAL-3048 todo and JAL-3026 disable VCF support
X-Git-Tag: Release_2_11_4_0~45^2~18^2~615^2^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9f55824dd20f0ffcf10d4a751140198e910e5393;p=jalview.git

JAL-3048 todo and JAL-3026 disable VCF support
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 2587866..a40044a 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5633,6 +5633,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   @Override
   protected void loadVcf_actionPerformed()
   {
+    // TODO: JAL-3048 - No VCF support in JsJalview
     JalviewFileChooser chooser = new JalviewFileChooser(
             Cache.getProperty("LAST_DIRECTORY"));
     chooser.setFileView(new JalviewFileView());
diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 1cf482d..a64030b 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -1722,7 +1722,13 @@ public class GAlignFrame extends JInternalFrame
     fileMenu.add(exportAnnotations);
     fileMenu.add(loadTreeMenuItem);
     fileMenu.add(associatedData);
-    fileMenu.add(loadVcf);
+    /*
+     * No VCF import in Jalview-JS
+     * @j2sNative
+     */
+    {
+      fileMenu.add(loadVcf);
+    }
     fileMenu.addSeparator();
     fileMenu.add(closeMenuItem);