From: pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Date: Thu, 4 Aug 2011 13:19:25 +0000 (+0000)
Subject: ClustalO compile
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9ff87a1fc3251a6fb836a8e0e0648293e6bb731b;p=jabaws.git

ClustalO compile

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4466 e3abac25-378b-4346-85de-24260fe3988d
---

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
index 10113cb..441cdb0 100644
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -10,6 +10,14 @@ make
 chmod +x src/clustalw2 
 cd ..
 
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure 
+./configure
+make
+cd ..
+
 echo "Compiling Mafft..."
 cd mafft/core
 make clean
diff --git a/binaries/src/setexecflag.sh b/binaries/src/setexecflag.sh
index 898ffa4..e4d11a0 100644
--- a/binaries/src/setexecflag.sh
+++ b/binaries/src/setexecflag.sh
@@ -4,6 +4,9 @@ echo ""
 echo "Setting executable flag for Clustalw..."
 chmod +x clustalw/src/clustalw2 
 
+echo "Setting executable flag for Clustal Omega..."
+chmod +x clustalo/src/clustalo 
+
 echo "Setting executable flag for Mafft..."
 chmod +x mafft/binaries/* 
 chmod +x mafft/scripts/*