From: Jim Procter <j.procter@dundee.ac.uk>
Date: Fri, 11 Feb 2022 17:09:04 +0000 (+0000)
Subject: JAL-3931 fix - escape % symbols after urlencoding
X-Git-Tag: Release_2_11_2_0~13^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a031a30fa5066c659a589f768cf7982bdeaa1252;p=jalview.git

JAL-3931 fix - escape % symbols after urlencoding
---

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index ae2128b..8ac23ef 100644
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -1160,7 +1160,7 @@ public abstract class StructureViewerBase extends GStructureViewer
       } else {
           if (processingEntry.hasRetrievalUrl())
           {
-            String safePDBId = java.net.URLEncoder.encode(pdbid,"UTF-8");
+            String safePDBId = java.net.URLEncoder.encode(pdbid,"UTF-8").replace("%","__");
                      
             // retrieve from URL to new local tmpfile
             File tmpFile = File.createTempFile(safePDBId,