From: James Procter <j.procter@dundee.ac.uk>
Date: Mon, 27 Feb 2023 17:58:09 +0000 (+0000)
Subject: JAL-4134 TODO: alternative way of performing interactive picking using threshold
X-Git-Tag: Release_2_11_3_0~15^2^2~25
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a04bbb6c032ae6066d5c7f6fa83e6656ab58f6d7;p=jalview.git

JAL-4134 TODO: alternative way of performing interactive picking using threshold
---

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 3aacb07..84443e7 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -604,6 +604,9 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
         else
         {
           GraphLine thr = aa[graphStretch].getThreshold();
+          
+          // possible alternative for interactive selection - threshold gives 'ceiling' for forming a cluster
+          // when a row+column is selected, farthest common ancestor less than thr is used to compute cluster  
           int currentX = getColumnForXPos(evt.getX());
           ContactMatrixI matrix = av.getContactMatrix(aa[graphStretch]);
           if (matrix!=null)