From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 8 Nov 2016 15:47:30 +0000 (+0000)
Subject: JAL-2301 made T hydrophobic as per the cited conservation method
X-Git-Tag: Release_2_10_1^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a0559d1b4aa6c156f413cde0e7ae5c877cb3cbdb;p=jalview.git

JAL-2301 made T hydrophobic as per the cited conservation method
---

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index f855fde..4d46279 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -935,7 +935,7 @@ public class ResidueProperties
     hydrophobic.put("D", ZERO);
     hydrophobic.put("N", ZERO);
     hydrophobic.put("S", ZERO);
-    hydrophobic.put("T", ZERO);
+    hydrophobic.put("T", ONE);
     hydrophobic.put("P", ZERO);
   }
 
diff --git a/test/jalview/schemes/ResiduePropertiesTest.java b/test/jalview/schemes/ResiduePropertiesTest.java
index 41d7448..be6a10c 100644
--- a/test/jalview/schemes/ResiduePropertiesTest.java
+++ b/test/jalview/schemes/ResiduePropertiesTest.java
@@ -1570,7 +1570,7 @@ public class ResiduePropertiesTest
     checkProperty("polar", "YWHRKTSNDEQ-*X");
     checkProperty("positive", "HKR-*");
     checkProperty("proline", "P-*");
-    checkProperty("hydrophobic", "MILVFYWHKCGAC-*X");
+    checkProperty("hydrophobic", "MILVFYWHKTGAC-*X");
   }
 
   /**