From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 7 Mar 2019 15:08:15 +0000 (+0000)
Subject: JAL-2250	 default Apply Colour to All Groups selected
X-Git-Tag: Release_2_11_0~17^2~56
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a134511be07a998f7b80168dd26b632d53ed66b4;p=jalview.git

JAL-2250	 default Apply Colour to All Groups selected
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 25c6dd4..e17b331 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -2741,6 +2741,12 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     newap.av.setRedoList(viewport.getRedoList());
 
     /*
+     * copy any visualisation settings that are not saved in the project
+     */
+    newap.av.setColourAppliesToAllGroups(
+            viewport.getColourAppliesToAllGroups());
+
+    /*
      * Views share the same mappings; need to deregister any new mappings
      * created by copyAlignPanel, and register the new reference to the shared
      * mappings
diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index f94b74d..e0abfd9 100644
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -304,6 +304,7 @@ public class AlignViewport extends AlignmentViewport
     {
       residueShading.setConsensus(hconsensus);
     }
+    setColourAppliesToAllGroups(true);
   }
 
   boolean validCharWidth;