From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 16 May 2012 10:08:43 +0000 (+0100)
Subject: fixed JAL-1086: pass column index so colourscheme profile data is used to calculate... 
X-Git-Tag: Jalview_2_9~526
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a23cf1abf575cbcdbaf6f6948e8a2ee97f570244;p=jalview.git

fixed JAL-1086: pass column index so colourscheme profile data is used to calculate symbol colour
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index d0670c2..c6b95e4 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -928,7 +928,7 @@ public class AnnotationRenderer
               // g.drawRect(x*av.charWidth, (int)ht, av.charWidth,
               // (int)(scl));
               // g.setColor(profcolour.findColour(dc[0]).darker());
-              g.setColor(profcolour.findColour(dc[0]));
+              g.setColor(profcolour.findColour(dc[0], column));
 
               hght = (ht + (scl - lm.getDescent() - lm.getBaselineOffsets()[lm
                       .getBaselineIndex()]));