From: Jim Procter Date: Mon, 24 Oct 2016 14:43:05 +0000 (+0100) Subject: JAL-2234 reordered seqs (after sequence data was reordered) so files match the exampl... X-Git-Tag: Release_2_10_0b1~1^2~1^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a2402e4ec48d2cc1ece5980aa16069e770766551;p=jalview.git JAL-2234 reordered seqs (after sequence data was reordered) so files match the example project files --- diff --git a/examples/plantfdx.fa b/examples/plantfdx.fa index f314c85..80d7133 100644 --- a/examples/plantfdx.fa +++ b/examples/plantfdx.fa @@ -34,18 +34,18 @@ IETHKEEELTA- ----------------------------------------------------------ATYKVKFITPEGEQ EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVT IETHREEDMV-- ->FER1_ARATH/1-148 -----MASTALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKS-STARGGRVTAMATYKVKFITPEGEQ -EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV -IETHKEEAIM-- ->FER_BRANA/1-96 -----------------------------------------------------------ATYKVKFITPEGEQ -EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVT -IETHKEEELV-- >FER2_ARATH/1-148 ----MASTALSSAIVGTSFIRRSPAPISLRSLPSANT-QSLFGLKS-GTARGGRVTAMATYKVKFITPEGEL EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVT IETHKEEDIV-- +>FER_BRANA/1-96 +----------------------------------------------------------ATYKVKFITPEGEQ +EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVT +IETHKEEELV-- +>FER1_ARATH/1-148 +----MASTALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKS-STARGGRVTAMATYKVKFITPEGEQ +EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVV +IETHKEEAIM-- >Q93Z60_ARATH/1-118 ----MASTALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKS-STARGGRVTAMATYKVKFITPEGEQ EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD-------------------- diff --git a/examples/uniref50.fa b/examples/uniref50.fa index 4bdbfb4..6e6c670 100755 --- a/examples/uniref50.fa +++ b/examples/uniref50.fa @@ -34,18 +34,18 @@ TIETHKEEELTA- -----------------------------------------------------------ATYKVKFITPEGE QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDV TIETHREEDMV-- ->FER1_ARATH Ferredoxin-1, chloroplast precursor -MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMATYKVKFITPEGE -QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDV -VIETHKEEAIM-- ->FER_BRANA Ferredoxin ------------------------------------------------------------ATYKVKFITPEGE -QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDV -TIETHKEEELV-- >FER2_ARATH Ferredoxin-2, chloroplast precursor MAST----ALSSAIVGTSFIRRSPAPISLRSLPSANTQ--SLFGLKS-GTARGGRVTAMATYKVKFITPEGE LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDV TIETHKEEDIV-- +>FER_BRANA Ferredoxin +-----------------------------------------------------------ATYKVKFITPEGE +QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDV +TIETHKEEELV-- +>FER1_ARATH Ferredoxin-1, chloroplast precursor +MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMATYKVKFITPEGE +QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDV +VIETHKEEAIM-- >Q93Z60_ARATH At1g10960/T19D16_12 MAST----ALSSAIVSTSFLRRQQTPISLRSLPFANTQ--SLFGLKS-STARGGRVTAMATYKVKFITPEGE QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDD-------------------