From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 9 Feb 2017 08:41:33 +0000 (+0000)
Subject: JAL-2405 set initial selection group alignment context
X-Git-Tag: Release_2_10_3b1~353
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a25f31a9140c9764baf76ec1c2ede98c1e3e52f9;p=jalview.git

JAL-2405 set initial selection group alignment context
---

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index e5c7b4c..8fa14ae 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1073,7 +1073,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
   }
 
   /**
-   * Set the selection group for this window.
+   * Set the selection group for this window. Also sets the current alignment as
+   * the context for the group, if it does not already have one.
    * 
    * @param sg
    *          - group holding references to sequences in this alignment view
@@ -1083,7 +1084,7 @@ public abstract class AlignmentViewport implements AlignViewportI,
   public void setSelectionGroup(SequenceGroup sg)
   {
     selectionGroup = sg;
-    if (sg != null)
+    if (sg != null && sg.getContext() == null)
     {
       sg.setContext(alignment);
     }
diff --git a/test/jalview/gui/AlignViewportTest.java b/test/jalview/gui/AlignViewportTest.java
index 1cdcdb7..06df70a 100644
--- a/test/jalview/gui/AlignViewportTest.java
+++ b/test/jalview/gui/AlignViewportTest.java
@@ -38,6 +38,7 @@ import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.SearchResults;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.io.DataSourceType;
 import jalview.io.FileLoader;
@@ -382,4 +383,25 @@ public class AlignViewportTest
     af.getViewport().setSearchResults(null);
     assertFalse(af.getViewport().hasSearchResults());
   }
+
+  /**
+   * Verify that setting the selection group has the side-effect of setting the
+   * context on the group, unless it already has one
+   */
+  @Test(groups = { "Functional" })
+  public void testSetSelectionGroup()
+  {
+    AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+            "examples/uniref50.fa", DataSourceType.FILE);
+    AlignViewport av = af.getViewport();
+    SequenceGroup sg1 = new SequenceGroup();
+    SequenceGroup sg2 = new SequenceGroup();
+
+    av.setSelectionGroup(sg1);
+    assertSame(sg1.getContext(), av.getAlignment()); // context set
+
+    sg2.setContext(sg1);
+    av.setSelectionGroup(sg2);
+    assertSame(sg2.getContext(), sg1); // unchanged
+  }
 }