From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 7 May 2018 17:08:38 +0000 (+0100)
Subject: JAL-2321 patch test to ensure structures are actually annotated when loaded directly... 
X-Git-Tag: Release_2_10_4~7^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a2684be1a91eaa743a5b0efa8be66590d2a80cfb;p=jalview.git

JAL-2321 patch test to ensure structures are actually annotated when loaded directly to desktop
---

diff --git a/test/jalview/structure/Mapping.java b/test/jalview/structure/Mapping.java
index 85aea40..4bee3f5 100644
--- a/test/jalview/structure/Mapping.java
+++ b/test/jalview/structure/Mapping.java
@@ -260,6 +260,8 @@ public class Mapping
   @Test(groups = { "Functional" })
   public void compareTransferredToRefPDBAnnot() throws Exception
   {
+    StructureImportSettings.setProcessSecondaryStructure(true);
+    StructureImportSettings.setVisibleChainAnnotation(true);
     StructureImportSettings.setShowSeqFeatures(true);
     AlignFrame ref = new FileLoader(false)
             .LoadFileWaitTillLoaded("test/jalview/ext/jmol/1QCF.pdb",