From: Jim Procter <jprocter@dundee.ac.uk>
Date: Fri, 24 May 2024 15:36:37 +0000 (+0100)
Subject: JAL-4159 fix PairwiseAlignmentPanelTest - reinstate correct recording of the endRes... 
X-Git-Tag: Release_2_11_4_0~31^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a397e016283fde696471bf718f7a8ba958ad1dc2;p=jalview.git

JAL-4159 fix PairwiseAlignmentPanelTest - reinstate correct recording of the endRes for each sequence aligned
---

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 757c8d1..e806d2b 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -468,6 +468,8 @@ public class AlignSeq
     int trace;
     maxscore = score[i][j] / 10f;
 
+    seq1end = maxi + 1;
+    seq2end = maxj + 1;
 
     aseq1 = new int[seq1.length + seq2.length];
     aseq2 = new int[seq1.length + seq2.length];