From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 19 Feb 2016 17:00:55 +0000 (+0000)
Subject: JAL-1705 handle case of sequence with no dataset sequence
X-Git-Tag: Release_2_10_0~296^2~22^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a4ace9297e743fb504dffd43ebb11074db263e10;p=jalview.git

JAL-1705 handle case of sequence with no dataset sequence
---

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 5dfd434..3fc8c28 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -321,7 +321,8 @@ public class AlignedCodonFrame
       {
         for (SequenceI sourceAligned : al.getSequences())
         {
-          if (ssm.mapping.to == sourceAligned.getDatasetSequence())
+          if (ssm.mapping.to == sourceAligned.getDatasetSequence()
+                  || ssm.mapping.to == sourceAligned)
           {
             return sourceAligned;
           }