From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 27 Mar 2017 08:11:47 +0000 (+0100)
Subject: JAL-2428 pass AlignmentView to TreeModel so Show Input Data works
X-Git-Tag: Release_2_10_2~3^2~105^2~2^2~54
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a58c1f3005f962f3d48043e38fd5e621081eb9b0;p=jalview.git

JAL-2428 pass AlignmentView to TreeModel so Show Input Data works
---

diff --git a/src/jalview/analysis/TreeBuilder.java b/src/jalview/analysis/TreeBuilder.java
index 6d5b0fe..5347ba2 100644
--- a/src/jalview/analysis/TreeBuilder.java
+++ b/src/jalview/analysis/TreeBuilder.java
@@ -55,6 +55,8 @@ public abstract class TreeBuilder
 
   Vector<SequenceNode> node;
 
+  private AlignmentView seqStrings;
+
   /**
    * Constructor
    * 
@@ -68,7 +70,7 @@ public abstract class TreeBuilder
     int start, end;
     boolean selview = av.getSelectionGroup() != null
             && av.getSelectionGroup().getSize() > 1;
-    AlignmentView seqStrings = av.getAlignmentView(selview);
+    seqStrings = av.getAlignmentView(selview);
     if (!selview)
     {
       start = 0;
@@ -459,4 +461,9 @@ public abstract class TreeBuilder
     }
   }
 
+  public AlignmentView getOriginalData()
+  {
+    return seqStrings;
+  }
+
 }
diff --git a/src/jalview/analysis/TreeModel.java b/src/jalview/analysis/TreeModel.java
index 62b0594..61c194d 100644
--- a/src/jalview/analysis/TreeModel.java
+++ b/src/jalview/analysis/TreeModel.java
@@ -95,6 +95,7 @@ public class TreeModel
   {
     this(tree.getSequences(), tree.getTopNode(), tree.hasDistances(), tree
             .hasBootstrap(), tree.hasRootDistance());
+    seqData = tree.getOriginalData();
   }
 
   /**