From: Jim Procter Date: Tue, 18 Feb 2014 16:30:34 +0000 (+0000) Subject: clear out 2.8.0b1 what's new and add JAL-1445 to list of new features X-Git-Tag: Jalview_2_9~207^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a5eefc708b5f7aaedcd1640f944dd5b2851ea614;p=jalview.git clear out 2.8.0b1 what's new and add JAL-1445 to list of new features --- diff --git a/help/helpTOC.xml b/help/helpTOC.xml index aa10130..c0e9b66 100755 --- a/help/helpTOC.xml +++ b/help/helpTOC.xml @@ -24,6 +24,7 @@ + diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 79cf7c9..55e94ef 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -22,51 +22,16 @@

- What's new ?
Jalview 2.8.0b1 is a bugfix - release for Jalview version 2.8.
As usual you can find the + What's new ?
Jalview 2.8.1 includes a range of new features developed in the last 12 months.
As usual you can find the highlights below, and the comprehensive list is given in the Jalview 2.8.0b1 Release Notes. + href="releases.html#Jalview2.8.1">Jalview 2.8.1 Release Notes.

- This bug fix release includes numerous minor enhancements made over - the last 12 months. Importantly, it is also the first release that - provides Jalview as a trusted application, signed with a certificate - donated to us by Certum. -

Enhancements and new features

Allow disorder predictions to be made on the current - selection (or visible selection) in the same way that JPred works
allow import of data from gzipped files
Improved per-sequence 'colour-by-annotation' performance
Support '' style escaping of quotes in Newick files
group options for JABAWS service by command line name
Select primary source when selecting authority in database - fetcher GUI
COMBINE statement uses current SEQUENCE_REF and GROUP_REF - scope to group annotation rows
add .mfa to FASTA file extensions recognised by Jalview
groovy scripting for headless jalview operation
Output in Stockholm format
Extended the feature settings dialog to allow columns to be selected containing particular sequence features.

Bug fixes

Uniprot and PDB database cross-reference fetching works - properly
'View all structures' in the desktop is more reliable
Web services parameter dialog box shows the options enabled - for different presets
Interactive creation of RNA secondary structure works more - smoothly
Keyboard mode 'P' command jumps to the right place
Improved support for parsing database cross-references via - Stockholm and Rfam database
Improved semantics in annotation files for grouping - annotation rows associated with particular sequences and groups
More robust DNA->Amino acid translation
Improved Headless-mode operation for DAS annotation - retrieval, groovy script execution and alignment figure generation
annotation label tooltip text needs to be wrapped