From: cmzmasek@gmail.com Date: Wed, 23 Oct 2013 01:10:07 +0000 (+0000) Subject: hDGE_amylase missspelled issue X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a747ad8f772eec120917d424ce08ddfc5230e5ff;p=jalview.git hDGE_amylase missspelled issue --- diff --git a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java index d62d69e..dfde916 100644 --- a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java +++ b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java @@ -64,7 +64,7 @@ public final class HmmscanPerDomainTableParser { private static final boolean IGNORE_DUFS_DEFAULT = false; private static final int MAX_ALLOWED_OVERLAP_DEFAULT = -1; private static final boolean IGNORE_REPLACED_RRMS = false; - private static final boolean IGNORE_hDGE_amylase = true; //TODO eventually remove me, added 10/22/13 + private static final boolean IGNORE_hGDE_amylase = true; //TODO eventually remove me, added 10/22/13 private final Set _filter; private final FilterType _filter_type; private final File _input_file; @@ -452,7 +452,7 @@ public final class HmmscanPerDomainTableParser { && ( uc_id.contains( "RRM_1" ) || uc_id.contains( "RRM_3" ) || uc_id.contains( "RRM_5" ) || uc_id .contains( "RRM_6" ) ) ) { } - else if ( IGNORE_hDGE_amylase && ( uc_id.equals( "hDGE_amylase" ) ) ) { + else if ( IGNORE_hGDE_amylase && ( uc_id.equals( "hGDE_amylase" ) ) ) { } else if ( isIgnoreVirusLikeIds() && ( uc_id.contains( VIR ) || uc_id.contains( PHAGE ) || uc_id.contains( RETRO )