From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 11 May 2012 13:15:56 +0000 (+0100)
Subject: JAL-972 local do not have a coordsys element with source metadata (JAL-424 would... 
X-Git-Tag: Jalview_2_9~532^2~8
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a7f34b0d86a0ebc79dcb26d36e73fc7a64581fee;p=jalview.git

JAL-972 local do not have a coordsys element with source metadata (JAL-424 would resolve this!)
---

diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
index 5f18331..a63727f 100644
--- a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@ -94,7 +94,9 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
     this.source = source;
     this.dbname = dbname;
     this.dbrefname = dbrefname;
-    this.coordsys = coordsys;
+    if (coordsys!=null ) {
+      this.coordsys = coordsys;
+    }
     this.connprops=connprops;
   }
 
@@ -122,7 +124,7 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
 
   public String getDbVersion()
   {
-    return coordsys.getVersion();
+    return coordsys!=null ? coordsys.getVersion() : "";
   }
 
   public AlignmentI getSequenceRecords(String queries) throws Exception
@@ -299,7 +301,7 @@ public class DasSequenceSource extends DbSourceProxyImpl implements
 
   public String getTestQuery()
   {
-    return coordsys.getTestRange();
+    return coordsys==null ? "" : coordsys.getTestRange();
   }
 
   public boolean isValidReference(String accession)