From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 12 May 2016 11:24:50 +0000 (+0100)
Subject: JAL-2103 fallback to returning trimmed profile if full width MSA not available
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a7f9598fbdcd7fbeac3fc6f24b41e39e344afc55;p=jalview.git

JAL-2103 fallback to returning trimmed profile if full width MSA not available
---

diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java
index da53ef5..ff65d05 100644
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -109,7 +109,7 @@ class JPredThread extends JWS1Thread implements WSClientI
               getGapChar(), SequenceInfo, this.msa != null,
               this.predMap,
               result.getPredfile(), result.getAligfile(),
-              getFullAlignmentSource());
+              (msa == null) ? getFullAlignmentSource() : null);
       return resview; // Alignment, ColumnSelection
     }