From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Wed, 28 Nov 2012 23:06:01 +0000 (+0000)
Subject: Edited wiki page rio through web user interface.
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a83ad0f29126ebf4ea2d506d34a18531baa96788;p=jalview.git

Edited wiki page rio through web user interface.
---

diff --git a/wiki/rio.wiki b/wiki/rio.wiki
index ab4155c..76a4ae7 100644
--- a/wiki/rio.wiki
+++ b/wiki/rio.wiki
@@ -25,6 +25,11 @@ path/to/forester.jar org.forester.application.rio [options] <gene trees file> <s
 
   * -cu: cutoff for ultra-paralog output (default: 50)
 
+==== Sort ====
+
+  0: orthologies
+  1: orthologies > super orthologies
+  2: super orthologies > orthologies
 
 ==== Gene tree ====
 Must be in phyloXM format, with taxonomy and sequence data in appropriate fields ([http://forester.googlecode.com/files/wnt_gene_tree.xml example]).