From: jprocter <Jim Procter>
Date: Wed, 29 Aug 2007 12:39:25 +0000 (+0000)
Subject: applet and application menu entry differences and consensus only differences
X-Git-Tag: Release_2_4~301
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=a8a3ca19aa9240b9d816ed9e7dc8be45209989ae;p=jalview.git

applet and application menu entry differences and consensus only differences
---

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index 546a94a..7b9b0d5 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -19,10 +19,18 @@
         <em>Deletes the annotation row whose label was clicked in order to bring 
         up the menu.</em> </li>
       <li><strong>Show All Hidden Rows</strong><br>
-        <em>Shows all hidden annotation rows.</em> </li>
-      <li><strong>Export Annotation</strong><br>
-        <em>Annotations can be saved to file or output to a text window in the 
-        Jalview annotations format. </em> </li>
+        <em>Shows all hidden annotation rows.</em> </li>
+      <li><strong>Export Annotation</strong> <em>(Application only)</em><br>
+       <em>Annotations can be saved to file or output to a text window in the 
+        Jalview annotations format. </em> </li>
+      <li><strong>Show Values in Text Box</strong> <em>(applet only)</em><br>
+        <em>Opens a text box with a list of comma-separated values corresponding 
+        to the annotation (numerical or otherwise) at each position in the row. 
+        This is useful to export alignment quality measurements for further analysis.</em> 
+      </li>
+   </ul>
+   <em>The following additional entries are avalable when the popup menu is opened on a consensus sequence annotation row:</em> 
+   <ul>
       <li><strong>Ignore Gaps in Consensus</strong><br>
         If this checkbox is selected, all consensus calculations performed in 
         the current Alignment window will be done without counting gaps as a consensus